fix broken IO with httpx>=0.24 (#1324)

* fix broken IO with httpx>=0.24

* add RNs

Author: cdiener

release-notes/next-release.md

@@ -11,6 +11,8 @@ Fix an issue where [`runfrog`](https://github.com/matthiaskoenig/fbc_curation/is
 not work via github actions or local installation by removing the use of obsolete numpy
 aliases for `float` and `bool`.
 
+Fix a bug where installing httpx>=0.24 would break cobrapy IO.
+
 ## Other
 
 ## Deprecated features

setup.cfg

@@ -6,7 +6,7 @@ parse = (?P<major>\d+)
 	\.(?P<minor>\d+)
 	\.(?P<patch>\d+)
 	(?P<release>[a]*)(?P<num>\d*)
-serialize = 
+serialize =
 	{major}.{minor}.{patch}{release}{num}
 	{major}.{minor}.{patch}
 tag_name = {new_version}
@@ -15,15 +15,15 @@ tag_name = {new_version}
 name = cobra
 url = https://opencobra.github.io/cobrapy
 download_url = https://pypi.org/project/cobra
-project_urls = 
+project_urls =
 	Source Code = https://github.com/opencobra/cobrapy
 	Documentation = https://cobrapy.readthedocs.io
 	Bug Tracker = https://github.com/opencobra/cobrapy/issues
 author = The cobrapy core development team.
 author_email = [email protected]
 maintainer = Moritz E. Beber
 maintainer_email = [email protected]
-classifiers = 
+classifiers =
 	Development Status :: 5 - Production/Stable
 	Intended Audience :: Science/Research
 	License :: OSI Approved :: GNU General Public License v2 or later (GPLv2+)
@@ -41,7 +41,7 @@ license = LGPL-2.0-or-later OR GPL-2.0-or-later
 description = COBRApy is a package for constraint-based modeling of metabolic networks.
 long_description = file: README.rst, INSTALL.rst
 long_description_content_type = text/x-rst
-keywords = 
+keywords =
 	metabolism
 	biology
 	constraint-based
@@ -53,12 +53,12 @@ keywords =
 
 [options]
 zip_safe = True
-install_requires = 
+install_requires =
 	appdirs ~=1.4
 	depinfo ~=1.7
 	diskcache ~=5.0
 	future
-	httpx ~=0.14
+	httpx ~=0.24
 	importlib_resources
 	numpy >=1.13,<1.24
 	optlang ~=1.5
@@ -68,24 +68,24 @@ install_requires =
 	rich >=8.0
 	ruamel.yaml ~=0.16
 	swiglpk
-tests_require = 
+tests_require =
 	tox
 packages = find:
-package_dir = 
+package_dir =
 	= src
 
 [options.packages.find]
 where = src
 
 [options.package_data]
-cobra = 
+cobra =
 	data/*
 	io/*.json
 
 [options.extras_require]
-array = 
+array =
 	scipy
-development = 
+development =
 	black
 	bumpversion
 	isort
@@ -97,7 +97,7 @@ universal = 1
 [bumpversion:part:release]
 optional_value = placeholder
 first_value = placeholder
-values = 
+values =
 	placeholder
 	a
 

src/cobra/io/web/cobrapy_repository.py

@@ -33,7 +33,7 @@ def __init__(
             Passed to the parent constructor in order to enable multiple inheritance.
 
         """
-        super().__init__(url="file:////", **kwargs)
+        super().__init__(url="file://", **kwargs)
 
     def get_sbml(self, model_id: str) -> bytes:
         """