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<code>read_sbml_model</code> does not substitute legacy SBML placeholders anymore

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#1149 In opencobra/cobrapy;

· rtsantos3 opened on Feb 3, 2022

SBML importer drops reversibility information for reactions not FBC format

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#976 In opencobra/cobrapy;

· davidtourigny opened on Jul 27, 2020

Gene Label is set equal to ID

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#963 In opencobra/cobrapy;

· Fxe opened on Jun 30, 2020

Switch SBML parser defaults to not rewriting IDs

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#955 In opencobra/cobrapy;

· cdiener opened on May 7, 2020

fix: inconsistency in the gene name storage in SBML files

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#950 In opencobra/cobrapy;

· BenjaSanchez opened on Apr 23, 2020

Loss of relation elements in annotation when writing a SBML model again.

bug

JSON

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#937 In opencobra/cobrapy;

· Hemant27031999 opened on Feb 23, 2020

Special character substitution during SBML parsing can break IDs

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#936 In opencobra/cobrapy;

· forestrywhale opened on Feb 18, 2020

TypeError: in method 'Reaction_setReversible', argument 2 of type 'bool'

bug

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#905 In opencobra/cobrapy;

· bdelepine opened on Sep 3, 2019

SBML documentation outdated

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#899 In opencobra/cobrapy;

· matthiaskoenig opened on Aug 19, 2019

trying to add existing exchange reactions changes bounds

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#886 In opencobra/cobrapy;

· Karrenbelt opened on Jul 31, 2019

error writing to sbml without prefixing identifiers

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#883 In opencobra/cobrapy;

· Karrenbelt opened on Jul 25, 2019

Make a decision on the behavior of Compartments

SBMLRelated to reading and writing SBML models.Related to reading and writing SBML models.

Status: Open.

#760 In opencobra/cobrapy;

· Midnighter opened on Sep 15, 2018

 ·  

COBRApy 1.0