Repositories list

• status.bioconductor.org

  Public
  Status page for Bioconductor based on cstate hugo site

  1•0•0•0•Updated Aug 2, 2025Aug 2, 2025

• SplicingGraphs

  Public
  Create, manipulate, visualize splicing graphs, and assign RNA-seq reads to them

  bioconductor-package

  R

  •1•2•0•0•Updated Aug 1, 2025Aug 1, 2025

• BiocStyle

  Public
  Issues and pull requests for BiocStyle should go here.

  bioconductor-packagecore-package

  R

  •20•13•31•4•Updated Aug 1, 2025Aug 1, 2025

• EuroBioC2025

  Public
  Website of the European Bioconductor Conference 2025

  conferencebioconductoreuropean

  CSS

  •4•2•0•0•Updated Aug 1, 2025Aug 1, 2025

• bioc-common-python

  Public
  Python

  •2•1•0•0•Updated Aug 1, 2025Aug 1, 2025

• packagebuilder

  Public
  JavaScript

  •7•5•1•0•Updated Aug 1, 2025Aug 1, 2025

• AnVIL

  Public
  Interact with AnVIL and Leonardo projects

  R

  •9•8•12•0•Updated Jul 31, 2025Jul 31, 2025

• support.bioconductor.org

  Public
  support site code base. Based on Biostars.

  Python

  •

  MIT License

  •2•2•22•0•Updated Jul 31, 2025Jul 31, 2025

• bioconductor-training

  Public
  Bioconductor teaching and education committee

  trainingeducationteaching+ 2bioconductorcommittee

  HTML

  •26•49•7•0•Updated Jul 31, 2025Jul 31, 2025

• CSAMA-labs

  Public
  laboratory materials for the Bressanone course

  HTML

  •5•2•1•1•Updated Jul 31, 2025Jul 31, 2025

• BBS

  Public
  The Bioconductor Build System

  Shell

  •12•11•54•3•Updated Jul 31, 2025Jul 31, 2025

• BiocPkgDash

  Public
  R

  •0•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• BiocStickers

  Public
  Stickers for some Bioconductor packages - feel free to contribute and/or modify.

  bioconductorstickers

  R

  •

  Other

  •114•129•13•0•Updated Jul 30, 2025Jul 30, 2025

• GenomicFeatures

  Public
  Query the gene models of a given organism/assembly

  bioconductor-packagecore-package

  R

  •11•27•8•1•Updated Jul 29, 2025Jul 29, 2025

• AnnotationDbi

  Public
  Manipulation of SQLite-based annotations in Bioconductor

  bioconductor-packagecore-package

  R

  •10•9•4•2•Updated Jul 29, 2025Jul 29, 2025

• BiocGenerics

  Public
  Defines many S4 generic functions used in Bioconductor

  bioconductor-packagecore-package

  R

  •8•12•0•0•Updated Jul 28, 2025Jul 28, 2025

• Rsamtools

  Public
  Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import

  bioconductor-packagecore-package

  R

  •

  Other

  •28•28•14•2•Updated Jul 28, 2025Jul 28, 2025

• GenomicAlignments

  Public
  Representation and manipulation of short genomic alignments

  bioconductor-packagecore-package

  R

  •15•11•8•3•Updated Jul 28, 2025Jul 28, 2025

• BiocAsia2025

  Public
  CSS

  •

  MIT License

  •0•0•0•0•Updated Jul 28, 2025Jul 28, 2025

• bioconductor_docker

  Public
  Docker Containers for Bioconductor

  docker-imagebioconductorbioconductor-containers

  Dockerfile

  •

  Artistic License 2.0

  •31•83•16•4•Updated Jul 28, 2025Jul 28, 2025

• AnnotationHub

  Public
  Client for the Bioconductor AnnotationHub web resource

  core-packageu24ca289073

  R

  •16•19•5•0•Updated Jul 25, 2025Jul 25, 2025

• quarto-extensions

  Public
  CSS

  •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• BiocArchive

  Public
  Match the CRAN archive repository with a previous Bioconductor release

  R

  •0•0•0•0•Updated Jul 23, 2025Jul 23, 2025

• BiocCheck

  Public
  core-servicesbioconductor-package

  R

  •27•9•9•0•Updated Jul 23, 2025Jul 23, 2025

• BiocFileCache

  Public
  Manage Files Across Sessions

  core-packageu24ca289073

  R

  •10•13•10•0•Updated Jul 23, 2025Jul 23, 2025

• code.bioconductor.org

  Public
  Tools for browsing and searching the code behind Bioconductor packages

  code-searchbioconductorr-packages

  CSS

  •

  MIT License

  •0•0•0•0•Updated Jul 22, 2025Jul 22, 2025

• GenomeInfoDb

  Public
  Utilities for manipulating chromosome names, including modifying them to follow a particular naming style

  bioconductor-packagecore-package

  R

  •13•32•5•0•Updated Jul 21, 2025Jul 21, 2025

• Seqinfo

  Public
  A simple S4 class for storing basic information about a collection of genomic sequences

  R

  •0•1•1•0•Updated Jul 21, 2025Jul 21, 2025

• GenomicFiles

  Public
  Distributed computing by file or by range

  bioconductor-packagecore-packageu24ca289073

  R

  •6•2•3•1•Updated Jul 21, 2025Jul 21, 2025

• annotation

  Public
  Bioconductor annotation workflow package

  1•0•0•0•Updated Jul 19, 2025Jul 19, 2025