Skip to content

@InPreD InPreD Norway

Change the repository type filter

All

    Repositories list

    15 repositories

    • tso500_v2_reference_preparation

      Public
      nextflow workflow to prepare reference files (PON) for tso500_v2_post_processing
      Nextflow
      •
      GNU Affero General Public License v3.0
      •0•0•2•1•Updated Aug 21, 2026Aug 21, 2026

    • tsoppy

      Public
      TSO500 v2 post processing cli
      GNU Affero General Public License v3.0
      •0•0•10•5•Updated Aug 21, 2026Aug 21, 2026

    • reference

      Public
      Storage of reference files within InPreD
      GNU Affero General Public License v3.0
      •0•0•1•1•Updated Aug 19, 2026Aug 19, 2026

    • PRONTO

      Public
      rePort geneRator fOr iNpred Tumor bOards
      Python
      •
      GNU General Public License v3.0
      •4•0•15•0•Updated Aug 18, 2026Aug 18, 2026

    • CANCAN

      Public
      R
      •
      Apache License 2.0
      •1•0•0•0•Updated Aug 5, 2026Aug 5, 2026

    • tso500_nxf_workflow

      Public
      Nextflow workflow to run Illumina LocalApp and TSOPPI on TSO500 data
      Nextflow
      •
      MIT License
      •1•2•5•3•Updated Apr 24, 2026Apr 24, 2026

    • tso500_v2_post_processing

      Public
      nextflow pipeline to handle post processing of TSO500 v2 data processed with Dragen
      Dockerfile
      •
      GNU Affero General Public License v3.0
      •0•0•1•0•Updated Mar 4, 2026Mar 4, 2026

    • 25-06_bioinfo_ws

      Public
      presentation and resources for NorPreM bioinformatics workshop in June 2025
      4•0•0•0•Updated May 27, 2025May 27, 2025

    • 25-06_bioinfo_ws_nextflow

      Public
      codespace template for nextflow workshop
      Dockerfile
      •
      GNU Affero General Public License v3.0
      •15•0•0•0•Updated May 27, 2025May 27, 2025

    • 25-06_bioinfo_ws_unit_testing

      Public
      codespace template for unit testing workshop
      Python
      •
      GNU Affero General Public License v3.0
      •15•0•0•0•Updated May 27, 2025May 27, 2025

    • TSOPPI_SADET

      Public
      Extraction of data for selected samples from either LocalApp or TSOPPI output directories
      Python
      •
      GNU Affero General Public License v3.0
      •1•0•13•0•Updated Mar 21, 2025Mar 21, 2025

    • TSOPPI_documentation

      Public
      Documentation for the TSOPPI images/tools.
      GNU General Public License v3.0
      •0•0•1•0•Updated Mar 17, 2025Mar 17, 2025

    • 24-03_bioinfo_ws

      Public
      presentation and resources for NorPreM bioinformatics workshop in March 2024
      12•1•0•0•Updated Jan 27, 2025Jan 27, 2025

    • local_app_prepper

      Public
      creates inputs.json files to be used with the LocalApp
      Python
      •
      GNU Affero General Public License v3.0
      •0•0•0•0•Updated Aug 28, 2024Aug 28, 2024

    • samplesheet_generator

      Public
      generates samplesheet compatible with the LocalApp
      Python
      •
      MIT License
      •1•0•4•0•Updated Mar 6, 2024Mar 6, 2024
    ProTip! When viewing an organization's repositories, you can use the props. filter to filter by custom property.