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    92 repositories

    • datajoint-python

      Public
      Relational data pipelines for the science lab
      mysqlpythons3databasespipeline-frameworkscientific-computingcloud-computingdata-analysisrelational-databasesdata-pipelines
      Python
      •
      GNU Lesser General Public License v2.1
      •88•182•38•5•Updated Jul 31, 2025Jul 31, 2025

    • element-miniscope

      Public
      DataJoint Element for miniscope calcium imaging analysis with CaImAn
      Jupyter Notebook
      •
      MIT License
      •14•2•2•2•Updated Jul 31, 2025Jul 31, 2025

    • datajoint-feedstock

      Public
      A conda-smithy repository for datajoint.
      BSD 3-Clause "New" or "Revised" License
      •6•0•1•0•Updated Jul 25, 2025Jul 25, 2025

    • datajoint-docs

      Public
      Landing Page for DataJoint Documentation
      CSS
      •
      MIT License
      •12•6•2•1•Updated Jul 23, 2025Jul 23, 2025

    • djlabhub-docker

      Public
      A docker image optimized for deploying to JupyterHub a JupyterLab environment with DataJoint Python.
      Python
      •6•3•6•2•Updated Jul 23, 2025Jul 23, 2025

    • element-array-ephys

      Public
      DataJoint Element for Neuropixels analysis with Kilosort
      Jupyter Notebook
      •
      MIT License
      •39•6•26•0•Updated Jul 8, 2025Jul 8, 2025

    • nginx-docker

      Public
      Python
      •5•1•1•1•Updated Jul 1, 2025Jul 1, 2025

    • element-moseq

      Public
      DataJoint Element for Motion Sequencing with Keypoint-MoSeq
      Jupyter Notebook
      •
      MIT License
      •7•5•0•0•Updated Jun 30, 2025Jun 30, 2025

    • element-optogenetics

      Public
      DataJoint Element for optogenetic experiments
      Jupyter Notebook
      •
      MIT License
      •8•0•0•0•Updated Jun 18, 2025Jun 18, 2025

    • datajoint-specs

      Public
      DataJoint Specifications
      Creative Commons Attribution Share Alike 4.0 International
      •2•1•0•0•Updated May 23, 2025May 23, 2025

    • element-zstack

      Public
      DataJoint Element for volumetric data analysis using Cellpose
      Python
      •
      MIT License
      •8•0•1•0•Updated May 20, 2025May 20, 2025

    • element-session

      Public
      DataJoint Element for session management
      Python
      •
      MIT License
      •18•1•1•0•Updated May 20, 2025May 20, 2025

    • element-lab

      Public
      DataJoint Element for lab management
      Python
      •
      MIT License
      •16•1•2•0•Updated May 20, 2025May 20, 2025

    • element-interface

      Public
      Common functions for the DataJoint Elements
      Python
      •
      MIT License
      •17•3•9•3•Updated May 20, 2025May 20, 2025

    • element-facemap

      Public
      DataJoint Element for behavioral analysis with Facemap
      Jupyter Notebook
      •
      MIT License
      •13•3•0•0•Updated May 20, 2025May 20, 2025

    • element-deeplabcut

      Public
      DataJoint Element for behavioral analysis with DeepLabCut
      Jupyter Notebook
      •
      MIT License
      •39•12•8•0•Updated May 20, 2025May 20, 2025

    • element-calcium-imaging

      Public
      DataJoint Element for multi-photon calcium imaging analysis with CaImAn, Suite2p, and EXTRACT
      Jupyter Notebook
      •
      MIT License
      •49•13•14•0•Updated May 20, 2025May 20, 2025

    • element-electrode-localization

      Public
      DataJoint Element for localizing Neuropixels electrodes
      Jupyter Notebook
      •
      MIT License
      •9•0•3•0•Updated May 20, 2025May 20, 2025

    • element-event

      Public
      DataJoint Element for event-based behavior experiments
      behaviorneuroscience
      Python
      •
      MIT License
      •18•2•3•0•Updated May 20, 2025May 20, 2025

    • element-animal

      Public
      DataJoint Element for animal management
      Python
      •
      MIT License
      •18•1•0•0•Updated May 20, 2025May 20, 2025

    • pyopenephys

      Public
      Python reader for open ephys
      Python
      •
      GNU General Public License v3.0
      •11•0•0•0•Updated May 19, 2025May 19, 2025

    • suite2p

      Public
      cell detection in calcium imaging recordings
      Jupyter Notebook
      •
      GNU General Public License v3.0
      •258•0•0•0•Updated Apr 17, 2025Apr 17, 2025

    • CaImAn

      Public
      Computational toolbox for large scale Calcium Imaging Analysis, including movie handling, motion correction, source extraction, spike deconvolution and result visualization.
      Python
      •
      GNU General Public License v2.0
      •386•0•0•1•Updated Mar 17, 2025Mar 17, 2025

    • .github

      Public
      Organizational default configs for @datajoint repos
      MIT License
      •4•0•0•0•Updated Feb 17, 2025Feb 17, 2025

    • anscombe-numcodecs

      Public
      Numcodecs implementation of photon conversion using poisson statistics
      Python
      •
      MIT License
      •9•0•0•1•Updated Feb 11, 2025Feb 11, 2025

    • datajoint-tutorials

      Public
      Getting started materials for DataJoint - with Calcium Imaging, Electrophysiology, Machine Learning examples
      Jupyter Notebook
      •150•12•1•1•Updated Jan 29, 2025Jan 29, 2025

    • manual-letsencrypt

      Public
      HCL
      •3•0•0•0•Updated Jan 2, 2025Jan 2, 2025

    • pharus

      Public
      Pharus is a generic REST API server backend for DataJoint pipelines built on top of flask, datajoint, and pyjwt.
      flaskdatajoint
      Python
      •
      MIT License
      •16•3•16•1•Updated Nov 15, 2024Nov 15, 2024

    • djtest-docker

      Public
      A docker image for running tests related to DataJoint Python.
      Shell
      •4•0•0•2•Updated Sep 3, 2024Sep 3, 2024

    • mysql-docker

      Public
      Docker image for MySQL configured to work with DataJoint
      Shell
      •19•18•6•1•Updated Sep 3, 2024Sep 3, 2024