linkml repositories

68 repositories

valuesets
Public
Common value sets (enums) for science, biomedicine, computing, and other areas
semantics standards monarchinitiative
semantics standards monarchinitiative fair-data linkml value-sets ai4curation
Python
•
Apache License 2.0
•0•15•6•8•Updated Sep 13, 2026Sep 13, 2026
dm-bip
Public
Data Model Based Ingestion Pipeline
Python
•
MIT License
•0•16•43•1•Updated Sep 11, 2026Sep 11, 2026
linkml
Public
Linked Open Data Modeling Language
schema linked-data json-schema
schema linked-data json-schema rdf modeling semantic-web owl standards data-modeling hacktoberfest
Python
•
Apache License 2.0
•190•612•747•101•Updated Sep 10, 2026Sep 10, 2026
linkml-store
Public
wrapper for multiple linkml storage engines
mongo mongodb rdf
mongo mongodb rdf data-lake hdf5 nosql-database triplestore database-wrapper data-stack semweb
Python
•
MIT License
•3•27•14•4•Updated Sep 10, 2026Sep 10, 2026
linkml-term-validator
Public
Validating LinkML schemas and datasets that depend on external terms
validation ontologies obofoundry
validation ontologies obofoundry linkml
Python
•
Apache License 2.0
•1•8•15•2•Updated Sep 8, 2026Sep 8, 2026
linkml-model
Public
Link Modeling Language (LinkML) model
yaml metadata json
yaml metadata json linked-data json-schema uml semantic-web metamodel schema-language data-integration
Python
•
Creative Commons Zero v1.0 Universal
•33•86•1•22•Updated Sep 4, 2026Sep 4, 2026
linkml-map
Public
Mapping between LinkML schemas
etl mapping monarchinitiative
etl mapping monarchinitiative linkml data-model-mapping ai4curation
Python
•
Other
•14•47•34•2•Updated Sep 3, 2026Sep 3, 2026
bdc-variable-library
Public
linkml model for variables in the BDC Knowledge Library
Python
•
BSD 3-Clause "New" or "Revised" License
•0•0•0•1•Updated Sep 3, 2026Sep 3, 2026
clinical-microschemas
Public
Repository for clinical microschemas based on the linkml-microschema repo
Just
•
MIT License
•1•2•0•4•Updated Sep 2, 2026Sep 2, 2026
linkml-redcap
Public
A LinkML project based on the rules and structure REDCap data dictionaries, instruments and databases.
Python
•
MIT License
•0•1•7•1•Updated Sep 1, 2026Sep 1, 2026
linkml-project-copier
Public
A copier template for your next LinkML project
template schema copier
template schema copier monarchinitiative linkml ai4curation
Python
•
MIT License
•8•26•11•3•Updated Sep 1, 2026Sep 1, 2026
GeoData
Public
Experimenting with a data schema for earth science data
Python
•
BSD 3-Clause "New" or "Revised" License
•0•1•0•1•Updated Sep 1, 2026Sep 1, 2026
schema-automator
Public
Automated assistance for the schema development lifecycle
python tools linked-data
python tools linked-data owl spreadsheets data-modeling schema-inference csvs linkml incatools
Python
•
BSD 3-Clause "New" or "Revised" License
•27•66•27•2•Updated Aug 27, 2026Aug 27, 2026
linkml-reference-validator
Public
Validate that supporting text quotes in your data actually appear in their cited references
pubmed monarchinitiative linkml
pubmed monarchinitiative linkml agentic-ai ai-guardrails ai4curation
Python
•
Apache License 2.0
•2•14•5•5•Updated Aug 22, 2026Aug 22, 2026
linkml-arrays
Public
Support for loading and dumping N-dimensional arrays in LinkML.
linked-data numpy arrays
linked-data numpy arrays multidimensional-arrays zarr linkml hdmf
Python
•
BSD 3-Clause "New" or "Revised" License
•1•7•2•2•Updated Aug 3, 2026Aug 3, 2026
PyShEx
Public
ShEx interpreter for ShEx 2.0
Jupyter Notebook
•
Creative Commons Zero v1.0 Universal
•16•29•33•11•Updated Aug 1, 2026Aug 1, 2026
ShExJSG
Public
ShEx AST as python classes
Python
•
Creative Commons Zero v1.0 Universal
•1•5•2•8•Updated Aug 1, 2026Aug 1, 2026
linkml-data-qc
Public
A compliance analysis tool for LinkML data files
data-engineering fair-data data-qc
data-engineering fair-data data-qc linkml
Python
•
Apache License 2.0
•0•4•0•2•Updated Aug 1, 2026Aug 1, 2026
linkml-registry
Public
Registry of schemas that use LinkML
registry schema-registry schemas
registry schema-registry schemas linkml
Python
•
Apache License 2.0
•7•19•2•1•Updated Jul 27, 2026Jul 27, 2026
linkml-solr
Public
Simple wrapper for using Solr with LinkML schemas
metadata solr linkml
metadata solr linkml
Python
•2•7•4•1•Updated Jul 23, 2026Jul 23, 2026
prefixmaps
Public
Semantic prefix map registry
obofoundry bioregistry linkml
obofoundry bioregistry linkml prefixmaps
Python
•
Apache License 2.0
•5•14•10•1•Updated Jul 2, 2026Jul 2, 2026
linkml-microschema-profile
Public
LinkML schema for CDEs
Just
•
MIT License
•1•2•1•4•Updated Jul 1, 2026Jul 1, 2026
pyjsg
Public
PyJSG -- JSON Schema Grammar bindings for Python
Python
•
Creative Commons Zero v1.0 Universal
•4•7•5•7•Updated Jul 1, 2026Jul 1, 2026
nsrr-sleep-cde-schema
Public
Python
•
MIT License
•0•1•0•5•Updated May 14, 2026May 14, 2026
linkml-owl
Public
Extension of LinkML runtime for converting instances of LinkML classes to OWL (classes or instances)
templates design-patterns owl
templates design-patterns owl ontologies ontology-generation ontology-design-patterns metaclasses linkml json2owl yaml2owl
Python
•2•23•12•1•Updated May 8, 2026May 8, 2026
linkml.github.io
Public
Website/splash page for main LinkML project
jekyll website data-modeling
jekyll website data-modeling splash-page linkml
HTML
•
MIT License
•5•3•9•0•Updated May 7, 2026May 7, 2026
grammar-python-antlr-linkml
Public
Python Antlr ShExC parser
Python
•
MIT License
•1•0•1•1•Updated May 1, 2026May 1, 2026
linkml-browser
Public
javascript python static-site-generator
javascript python static-site-generator user-interface linkml
HTML
•0•8•1•6•Updated Mar 8, 2026Mar 8, 2026
linkml-neon
Public
Experimenting with creating a LinkML schema for NEON data
environmental-data neon-data linkml
environmental-data neon-data linkml
Python
•
MIT License
•0•1•0•5•Updated Mar 6, 2026Mar 6, 2026
linkml-tutorial
Public
tutorial linkml
tutorial linkml
Python
•
MIT License
•1•10•0•0•Updated Feb 12, 2026Feb 12, 2026

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Linked data Modeling Language

All

68 repositories

valuesets

dm-bip

linkml

linkml-store

linkml-term-validator

linkml-model

linkml-map

bdc-variable-library

clinical-microschemas

linkml-redcap

linkml-project-copier

GeoData

schema-automator

linkml-reference-validator

linkml-arrays

PyShEx

ShExJSG

linkml-data-qc

linkml-registry

linkml-solr

prefixmaps

linkml-microschema-profile

pyjsg

nsrr-sleep-cde-schema

linkml-owl

linkml.github.io

grammar-python-antlr-linkml

linkml-browser

linkml-neon

linkml-tutorial

Repositories list

68 repositories