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@medema-group Marnix Medema's Research Group @ Wageningen University, NL

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    11 repositories

    • BiG-SCAPE

      Public
      Similarity networks of biosynthetic gene clusters
      bioinformaticsbiosynthetic-gene-clusters
      bioinformaticsbiosynthetic-gene-clusters
      JavaScript
      •
      GNU Affero General Public License v3.0
      •31•179•6•1•Updated Oct 5, 2026Oct 5, 2026

    • bgc-viewer

      Public
      Vue
      •
      Apache License 2.0
      •0•6•42•1•Updated Oct 5, 2026Oct 5, 2026

    • .github

      Public
      Orga-level repo
      MIT License
      •0•0•1•0•Updated Feb 5, 2026Feb 5, 2026

    • BiG-MAP

      Public
      The Biosynthetic Gene cluster Meta’omics abundance Profiler (BiG-MAP). A command-line tool that is able to profile the abundance and expression of a collection …
      metagenomicsmetabolomicsmetatranscriptomics
      metagenomicsmetabolomicsmetatranscriptomicsmicrobial-ecologyexpression-profile-clusteringdifferential-gene-expression-profilingendocrinology-and-metabolismfunctional-clustering
      Python
      •
      Other
      •9•35•14•1•Updated Jan 27, 2026Jan 27, 2026

    • COCOLOCUS

      Public
      Co-expression & functional inference of biosynthetic gene clusters
      R
      •
      GNU Affero General Public License v3.0
      •0•3•0•0•Updated Jan 26, 2026Jan 26, 2026

    • modern_python

      Public template
      Template to set up a modern Python project
      Python
      •
      The Unlicense
      •4•10•0•0•Updated Oct 21, 2025Oct 21, 2025

    • bigslice

      Public
      A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data
      Python
      •
      GNU Affero General Public License v3.0
      •42•105•45•1•Updated Aug 11, 2025Aug 11, 2025

    • BiG-VIEWS-documentation

      Public
      Apache License 2.0
      •0•0•0•0•Updated Aug 4, 2025Aug 4, 2025

    • Genome-Mining-2025

      Public
      Materials for the hands-on session 'Workflows for natural product genome mining with antiSMASH, BiG-SCAPE and MIBiG', of the CIIMAR short course Bioinformatics …
      GNU General Public License v3.0
      •0•1•0•0•Updated Jul 23, 2025Jul 23, 2025

    • BiG-SCAPE-workshop

      Public
      Expanded tutorial materials created for genome mining with BiG-SCAPE 2.0
      GNU General Public License v3.0
      •0•2•0•0•Updated Mar 18, 2025Mar 18, 2025

    • bigfamdb

      Public
      BGC Family Database webserver
      Python
      •
      GNU Affero General Public License v3.0
      •1•9•2•0•Updated May 18, 2023May 18, 2023
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