Repositories list

• vcf2maf

  Public
  Convert a VCF into a MAF, where each variant is annotated to only one of all possible gene isoforms

  perlvcfmaf+ 2vepisoforms

  Perl

  •

  Other

  •221•392•91•0•Updated Aug 2, 2025Aug 2, 2025

• smile-server

  Public
  Java

  •4•2•51•0•Updated Aug 1, 2025Aug 1, 2025

• igo-delivery

  Public
  Delivery email, symlinks and permissions for IGO projects

  Python

  •

  Apache License 2.0

  •0•1•0•0•Updated Aug 1, 2025Aug 1, 2025

• beagle

  Public
  Voyager Backend

  Python

  •

  Apache License 2.0

  •5•2•97•18•Updated Aug 1, 2025Aug 1, 2025

• forte

  Public
  Functional Observation of RNA Transcriptome Elements/Expression

  Nextflow

  •

  MIT License

  •1•8•28•6•Updated Aug 1, 2025Aug 1, 2025

• ridgeback

  Public
  Toil API

  Python

  •

  Apache License 2.0

  •2•1•38•6•Updated Jul 31, 2025Jul 31, 2025

• igo-demux

  Public
  Demultiplex Illumina sequencer output via DRAGEN, create fastq files and launch pipelines

  Python

  •

  Apache License 2.0

  •0•6•4•1•Updated Jul 31, 2025Jul 31, 2025

• tempo

  Public
  CCS research pipeline to process WES and WGS TN pairs

  Groovy

  •7•14•50•10•Updated Jul 31, 2025Jul 31, 2025

• smile-dashboard

  Public
  TypeScript

  •

  GNU Affero General Public License v3.0

  •8•0•0•1•Updated Jul 30, 2025Jul 30, 2025

• smile-label-generator

  Public
  SMILE messaging service for handling CMO label generation

  Java

  •

  GNU Affero General Public License v3.0

  •4•0•0•0•Updated Jul 30, 2025Jul 30, 2025

• ACCESS-Pipeline

  Public
  cfDNA Sequencing Pipeline with UMI

  cancer-genomics

  Python

  •

  MIT License

  •3•11•38•14•Updated Jul 30, 2025Jul 30, 2025

• igo-lims-plugins

  Public
  Sapio LIMS customizations to workflows for IGO

  Java

  •0•2•1•9•Updated Jul 29, 2025Jul 29, 2025

• ngs-stats

  Public
  NGS Statistics Database with historical Picard Stats, IGO fastq.gz paths and Sequencer Start & Stop Times

  HTML

  •0•1•2•1•Updated Jul 29, 2025Jul 29, 2025

• igo-run-qc-node

  Public
  JavaScript

  •0•0•0•1•Updated Jul 28, 2025Jul 28, 2025

• LimsRest

  Public
  the restful service used by the IGO LIMS

  Java

  •2•2•5•5•Updated Jul 23, 2025Jul 23, 2025

• igo-sample-submission-node

  Public
  Sample Submission API written in node.js

  JavaScript

  •1•0•1•31•Updated Jul 18, 2025Jul 18, 2025

• mutalyzer

  Public
  Tool suite for HGVS variant descriptions

  Python

  •

  MIT License

  •10•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• smile-request-filter

  Public
  CMO MetaDB Request Filter app

  Java

  •

  GNU Affero General Public License v3.0

  •4•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• smile-messaging-java

  Public
  CMO Messaging Library

  Java

  •

  GNU Affero General Public License v3.0

  •4•0•0•0•Updated Jul 18, 2025Jul 18, 2025

• smile-commons

  Public
  Centralized configurations for checkstyle plugin and dependency management.

  Java

  •

  GNU Affero General Public License v3.0

  •4•1•0•0•Updated Jul 18, 2025Jul 18, 2025

• ccs_cohort_utils

  Public
  Python

  •0•0•0•0•Updated Jul 16, 2025Jul 16, 2025

• igo-genomics

  Public
  Vue

  •0•1•3•0•Updated Jul 15, 2025Jul 15, 2025

• retriever

  Public
  Python

  •

  MIT License

  •2•0•0•0•Updated Jul 9, 2025Jul 9, 2025

• critfhirdeveloper

  Public template
  CRIT FHIR Developer Documentation

  HTML

  •

  Apache License 2.0

  •22k•0•0•1•Updated Jun 27, 2025Jun 27, 2025

• igo-sample-qc-node

  Public
  Sample QC with nodejs backend

  JavaScript

  •0•0•0•0•Updated Jun 19, 2025Jun 19, 2025

• cbsp-hackathon

  Public
  Computational Biology Summer Program Hackathon

  Jupyter Notebook

  •

  MIT License

  •21•13•1•2•Updated Jun 12, 2025Jun 12, 2025

• igo-inventory-app

  Public
  JavaScript

  •1•0•0•0•Updated Jun 11, 2025Jun 11, 2025

• voyager-sdk

  Public
  Python

  •

  Apache License 2.0

  •0•3•0•0•Updated May 30, 2025May 30, 2025

• argos-operator-v2

  Public
  Template Operator for Voyager SDK

  Python

  •0•0•0•0•Updated May 27, 2025May 27, 2025

• argos-cwl

  Public
  A portable and reproducible pipeline for targeted analysis

  Common Workflow Language

  •0•0•4•2•Updated May 24, 2025May 24, 2025