Souce code for pinga-lab.org

Contributing to this site

See CONTRIBUTING.md.

Dependencies

You'll need to install Urubu and all it's dependencies to build the site. See file requirements.txt for the complete dependency list. The build works on Python 2.7 or Python 3.6+.

You can create a conda environment with all required dependencies by running conda env create in the root of the repository. To activate the environment and run the build use source activate pinga-site.

Compiling the site

1. Open a terminal (cmd.exe on Windows) and go to the root of your clone of this repository.
2. Run urubu build to generate the HTML of the website.
3. Run urubu serve to start a simple server at the _build folder where the built HTML files are. Point your browser to http://127.0.0.1:8000 to view the site. Use Ctrl+C to kill the server.

Adding an image to the carousel of Latest papers

The carousel on the front page is generated from information in the _site.yml file. To add a new item, place the image in images/carousel and add an entry in to carousel: in _site.yml. Important: Images must be in 16:9 aspect ratio with a width of 600 px.

Adding a publication

The paper entries are .md files in the papers folder. The site theme takes a lot of extra metadata in the post to make the "Info" section of each entry.

To add a new entry, create the .md file in the corresponding folder. Please, follow the naming conventions used for the other files.

Metadata for papers

Required:

title: Geophysical tutorial: Euler deconvolution of potential-field data
author: uieda, oliveira-jr, barbosa
date: yyyy-mm-dd
journal: The Leading Edge
doi: 10.1190/tle33040448.1
citation: Uieda, L., V. C. Oliveira Jr, and V. C. F. Barbosa (2014), Geophysical tutorial: Euler deconvolution of potential-field data, The Leading Edge, 33(4), 448-450, doi:10.1190/tle33040448.1
layout: publication

• author should be a list of author ids. The id is the name of the authors file in the people folder. Authors that are not group members should be included in the authors field of _site.yml.
• citation has to be in a single line.

Optional:

repository: pinga-lab/paper-tle-euler-tutorial
supplement: 10.6084/m9.figshare.923450
pdf: paper-tle.pdf
oa: true
inreview: true
related_papers: paper-polynomial-eqlayer-2013,paper-radial3d-gradients-2013
related_thesis: oliveira-jr-phd
related_grants: cnpq-fund-2012-barbosa

• An entry with oa: true will be marked as open-acess.
• inreview: true will mark the entry as under peer-review (unpublished).
• pdf should be the name of PDF file in the pdf folder
• related_papers should be a comma-separated list (no spaces) of paper IDs that are related to this research. Each paper ID should be the name of an .md file in the papers folder
• related_thesis should be a comma-separated list (no spaces) of theses IDs that are related to this research. Each thesis ID should be the name of an .md file in the thesis folder
• related_grants should be a comma-separated list (no spaces) of grants IDs that are related to this research. Each grant ID should be the name of an .md file in the grants folder

Adding a new member

Group member pages are the .md files in the people folder. To add a new member, create the .md file in the corresponding folder with the last name of the person (in lowercase).

Metadata for members

Required:

title: Fulano de Tal
date: yyyy-mm-dd
position: PhD Student
institution: Observatório Nacional
location: Rio de Janeiro, Brasil
period: 2015-2018
layout: person

• Use the date that you started on the group.
• position should be one of: PhD Student, MSc Student, Undergraduate Student
• period should be the year when you first started and the year when you left the group (use Present if you're still a member).

Optional:

lattes: http://lattes.cnpq.br/8939551682050504
website: http://www.leouieda.com
picture: uieda.jpg
github: leouieda
email: [email protected]
email2: [email protected]
scholar: http://scholar.google.com.br/citations?user=qfmPrUEAAAAJ
researcherid: G-3258-2012
researchgate: https://www.researchgate.net/profile/Leonardo_Uieda
orcid: 0000-0001-6123-9515
advisor: barbosa

• advisor should be the id of your advisor (the name of his/her file in the people folder).
• picture should be the name of a square image in folder images/pic. If omitted, will use a default image.

Adding a new thesis

We also have a page with all theses defended by group members. To add a new one, create a new .md file in the thesis folder. The file name should be your page name plus the degree all in lowercase, e.g. uieda-msc.md. You should also place a PDF version of the thesis with the same name in the pdf folder.

Metadata for theses

Required:

title: Forward modeling and inversion of gravitational fields in spherical coordinates
author: uieda
advisor: barbosa
date: yyyy-mm-dd
period: 2011-2016
institution: Observatório Nacional
level: PhD
pdf: uieda-phd.pdf
sucupira: 154585
layout: publication

• author should be your author ids. The id is the name of the authors file in the people folder.
• advisor should be the author id of the thesis advisor.
• level should be one of: PhD, MSc, or Undergraduate.
• sucupira is the ID of your thesis on the Sucupira platform. You can get the ID by search for your thesis here, then get the ID number from the end of the link to your thesis. For example, the ID for the link https://sucupira.capes.gov.br/sucupira/public/consultas/coleta/trabalhoConclusao/viewTrabalhoConclusao.jsf?popup=true&id_trabalho=3627205 is 3627205.

Optional:

repository: leouieda/phd-thesis
doi: 10.6084/m9.figshare.923450
related_papers: paper-polynomial-eqlayer-2013,paper-radial3d-gradients-2013
related_thesis: oliveira-jr-phd
related_grants: cnpq-fund-2012-barbosa

• related_papers, related_thesis and related_grants are the same as for a paper.

Adding a new grant/project

We have a page with grants/projects developed by group members. To add a new one, create a new .md file in the grants folder. The file name should be the composed of the funding agency name, the name of the specific fund, the starting year and the PI page name, all in lowercase, e.g. cnpq-universal-2014-oliveira-jr.md.

Metadata for grants/projects

Required:

title: "Estimativa da direção da magnetização total de corpos 3D aproximadamente esféricos"
author: oliveira-jr
date: 2014-11-01
period: 2014-2017
agency: Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)
institution: Observatório Nacional
layout: publication

• author should be the PI (principal investigator) id. The id is the name of the authors file in the people folder.
• agency should be funding agency or company.

Optional:

title2: "Estimation of the total magnetization direction of approximately 3D spherical bodies"
grantname: MCTI/CNPQ/Universal 14/2014  - Faixa A - até R$ 30.000,00
grantid: 445752/2014-9
amount: R$ 20,000.00
related_thesis: daiana-msc
related_papers: paper-mag-dir-2015
related_grants: faperj-inst-2014-oliveira-jr,cnpq-universal-2014-oliveira-jr

• title2 is a second title for the grant/project. It could be, for example, the title in a different language.
• grantname should be the name of the specific fund provided by the agency.
• grantid should be the identification code of the specific fund provided by the agency.
• amount should be the amount of financial resources provided by the agency.
• related_papers, related_thesis and related_grants are the same as for a paper.

Automatic deploy with TravisCI

The site is automatically built and deployed to pinga-lab/pinga-lab.github.io every time a commit is pushed to the master branch. See files .travis.yml and ci-tools/deply-gh-pages.sh.

Inspired by Sleepy Coders and Mathieu Leplatre.

License

This work is licensed under a Creative Commons Attribution 4.0 International License.