Merge pull request #103 from poissonconsulting/f-ci

Standardize CI (tier: unimportant)

Author: sebdalgarno

.github/workflows/R-CMD-check.yaml

@@ -1,52 +1,17 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: R-CMD-check
 on:
   push:
     branches: [main, master]
   pull_request:
     branches: [main, master]
-
-name: R-CMD-check
-
-permissions: read-all
-
+permissions:
+  contents: read
 jobs:
   R-CMD-check:
-    runs-on: ${{ matrix.config.os }}
-
-    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
-
-    strategy:
-      fail-fast: false
-      matrix:
-        config:
-          - {os: macos-latest,   r: 'release'}
-          - {os: windows-latest, r: 'release'}
-          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
-          - {os: ubuntu-latest,   r: 'release'}
-          - {os: ubuntu-latest,   r: 'oldrel-1'}
-
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      R_KEEP_PKG_SOURCE: yes
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          r-version: ${{ matrix.config.r }}
-          http-user-agent: ${{ matrix.config.http-user-agent }}
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::rcmdcheck
-          needs: check
-
-      - uses: r-lib/actions/check-r-package@v2
-        with:
-          upload-snapshots: true
-          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'
+    uses: poissonconsulting/.github/.github/workflows/R-CMD-check.yaml@v1
+    with:
+      tier: unimportant
+      jags: false
+      tex: false
+      private: false
+    secrets: inherit

.github/workflows/pkgdown.yaml

@@ -1,5 +1,4 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: pkgdown
 on:
   push:
     branches: [main, master]
@@ -8,50 +7,11 @@ on:
   release:
     types: [published]
   workflow_dispatch:
-
-name: pkgdown
-
-permissions: read-all
-
+permissions:
+  contents: write
 jobs:
   pkgdown:
-    runs-on: ubuntu-latest
-    # Only restrict concurrency for non-PR jobs
-    concurrency:
-      group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-    permissions:
-      contents: write
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-pandoc@v2
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::pkgdown, local::.
-          needs: website
-
-      - name: Build site
-        run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)
-        shell: Rscript {0}
-
-      - name: Upload site artifact
-        if: github.event_name == 'pull_request'
-        uses: actions/upload-artifact@v4
-        with:
-          name: pkgdown-site
-          path: docs/
-
-      - name: Deploy to GitHub pages 🚀
-        if: github.event_name != 'pull_request'
-        uses: JamesIves/github-pages-deploy-action@v4.5.0
-        with:
-          clean: false
-          branch: gh-pages
-          folder: docs
+    uses: poissonconsulting/.github/.github/workflows/pkgdown.yaml@v1
+    with:
+      private: false
+    secrets: inherit

.github/workflows/test-coverage.yaml

@@ -1,61 +1,15 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
+name: test-coverage
 on:
   push:
     branches: [main, master]
   pull_request:
     branches: [main, master]
-
-name: test-coverage
-
-permissions: read-all
-
+permissions:
+  contents: read
 jobs:
   test-coverage:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr, any::xml2
-          needs: coverage
-
-      - name: Test coverage
-        run: |
-          cov <- covr::package_coverage(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
-          )
-          covr::to_cobertura(cov)
-        shell: Rscript {0}
-
-      - uses: codecov/codecov-action@v4
-        with:
-          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
-          file: ./cobertura.xml
-          plugin: noop
-          disable_search: true
-          token: ${{ secrets.CODECOV_TOKEN }}
-
-      - name: Show testthat output
-        if: always()
-        run: |
-          ## --------------------------------------------------------------------
-          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v4
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
+    uses: poissonconsulting/.github/.github/workflows/test-coverage.yaml@v1
+    with:
+      tex: false
+      private: false
+    secrets: inherit