Should add divergent transitions as indicator of convergence.
Stan manual suggests a small number of divergent transitions is "often good enough to move forward" if you have good rhat and ess values.
Look into how divergent transitions are tracked within cmdstanr - if any are flagged (regardless of whether or not that sample is one of the thinned samples) it makes more sense to look at as a percentage.
Initial suggestion is < 1% but we should also research to see if there is an accepted %.
Should add divergent transitions as indicator of convergence.
Stan manual suggests a small number of divergent transitions is "often good enough to move forward" if you have good rhat and ess values.
Look into how divergent transitions are tracked within cmdstanr - if any are flagged (regardless of whether or not that sample is one of the thinned samples) it makes more sense to look at as a percentage.
Initial suggestion is < 1% but we should also research to see if there is an accepted %.