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CNL specifies a list of $log_{10}$ likelihoods for each potential copy number, starting from zero.
I think the Number=G means the number of possible GT values that can be formed from the alleles (REF and ALT)? When using allele specific copy number alleles then there may be more than one possible GT for a given total copy number value.
Perhaps the Number=G should be changed to Number=.? And the same would go for CNP?
The text was updated successfully, but these errors were encountered:
The
FORMAT/CNL
field hasNumber=G
according to:hts-specs/VCFv4.5.tex
Line 1149 in a6a4504
but the field as described below seems to be in conflict:
hts-specs/VCFv4.5.tex
Line 1160 in a6a4504
I think the
Number=G
means the number of possible GT values that can be formed from the alleles (REF and ALT)? When using allele specific copy number alleles then there may be more than one possible GT for a given total copy number value.Perhaps the
Number=G
should be changed toNumber=.
? And the same would go forCNP
?The text was updated successfully, but these errors were encountered: