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leads to me to these warnings. Here I would like to report the one on the clipped data range.
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [-0.04347826..1.0].
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:105](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=104): UserWarning: Key `spots` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:125](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=124): UserWarning: Key `adata` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [-0.04347826..1.0].
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:105](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=104): UserWarning: Key `spots` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:125](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=124): UserWarning: Key `adata` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
Clipping input data to the valid range for imshow with RGB data ([0..1] for floats or [0..255] for integers). Got range [-0.04347826..1.0].
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:105](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=104): UserWarning: Key `spots` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
[/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py:125](http://localhost:8888/Users/macbook/embl/projects/basel/spatialdata/src/spatialdata/_core/_elements.py#line=124): UserWarning: Key `adata` already exists. Overwriting it in-memory.
self._check_key(key, self.keys(), self._shared_keys)
To reproduce, please run the notebook from this PR, which doesn't require any data (it uses the one from
squidpy
).The code cell
leads to me to these warnings. Here I would like to report the one on the clipped data range.
@timtreis reported that he cannot reproduce.
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