sequencing-data-analysis-training/mkdocs.yml at main · sib-swiss/sequencing-data-analysis-training · GitHub

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site_name: Introduction to Sequencing Data Analysis
nav:
    - Home: index.md
    - Precourse preparations: precourse.md
    - Course schedule: course_schedule.md
    - Day 1:
      - Introduction: day1/intro.md
      - Sequencing technologies: day1/sequencing_technologies.md
      - Setup: day1/server_login.md
      - Reproducibility: day1/reproducibility.md
      - Quality control: day1/quality_control.md
    - Day 2:
      - Read alignment: day2/read_alignment.md
      - File types: day2/file_types.md
      - Samtools: day2/samtools.md
    - Day 3:
      - IGV and visualisation: day3/igv_visualisation.md
    - Group work: group_work.md

theme:
  name: material
  logo: assets/images/SIB_logo.svg
  favicon: assets/images/SIB_logo.svg
  custom_dir: overrides

# Repository
repo_name: sib-swiss/NGS-introduction-training
repo_url: https://github.com/sib-swiss/sequencing-data-analysis-training
edit_uri: edit/main/docs/

markdown_extensions:
  - abbr
  - def_list
  - footnotes
  - tables
  - admonition
  - codehilite:
      guess_lang: false
  - sane_lists
  - smarty
  - toc
  - pymdownx.superfences
  - pymdownx.tabbed:
      alternate_style: true
  - attr_list
  - pymdownx.tabbed
  - pymdownx.details
  - pymdownx.keys
  - pymdownx.emoji:
      emoji_index: !!python/name:material.extensions.emoji.twemoji
      emoji_generator: !!python/name:material.extensions.emoji.to_svg
      options:
        custom_icons:
          - overrides/.icons
extra_css:
  - stylesheets/extra.css

extra_javascript:
  - javascripts/consent.js

extra:
  version:
    provider: mike
  consent:
    title: Cookie consent
    description: >-
      We use cookies to recognize your repeated visits and preferences, as well
      as to measure the effectiveness of our trainig material and whether users
      find what they're searching for. With your consent, you're helping us to
      make our training material better.
    cookies:
      matomo: Matomo Analytics