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2020-02-01T123026.287730.snakemake.log
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Building DAG of jobs...
Using shell: /bin/bash
Provided cores: 9223372036854775807
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 all
1 build_oncoprint_table
1 plot_oncoprint
3
[Sat Feb 1 12:30:27 2020]
rule build_oncoprint_table:
output: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.tsv
jobid: 2
wildcards: event=present
Get status with:
gcloud config set project snakemake-testing
gcloud beta lifesciences operations describe 1264563821085236371
gcloud beta lifesciences operations list
Worker released
Stopped running "snakejob-build_oncoprint_table-2": 100% 31.7M=0s
2020-02-01 19:32:20 (31.7 MB/s) - ‘/download.py’ saved [1246/1246]
Building DAG of jobs...
Creating conda environment workflow/envs/oncoprinttable.yaml...
Downloading and installing remote packages.
Environment for workflow/envs/oncoprinttable.yaml created (location: .snakemake/conda/c6778805)
Using shell: /bin/bash
Provided cores: 1 (use --cores to define parallelism)
Rules claiming more threads will be scaled down.
Job counts:
count jobs
1 build_oncoprint_table
1
[Sat Feb 1 19:33:48 2020]
rule build_oncoprint_table:
output: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.tsv
jobid: 0
wildcards: event=present
Activating conda environment: /workdir/.snakemake/conda/c6778805
Uploading to remote: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.tsv
Finished upload.
[Sat Feb 1 19:33:51 2020]
Finished job 0.
1 of 1 steps (100%) done
Complete log: /workdir/.snakemake/log/2020-02-01T193224.972289.snakemake.log
Started running "snakejob-build_oncoprint_table-2"
Stopped pulling "snakemake/snakemake:v5.10.0"
Started pulling "snakemake/snakemake:v5.10.0"
Worker "google-pipelines-worker-904ad6449325613c78306e1e0e4929eb" assigned in "us-west1-c"
[Sat Feb 1 12:33:59 2020]
Finished job 2.
1 of 3 steps (33%) done
[Sat Feb 1 12:33:59 2020]
rule plot_oncoprint:
input: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.tsv
output: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.pdf
jobid: 1
wildcards: event=present
Get status with:
gcloud config set project snakemake-testing
gcloud beta lifesciences operations describe 13321012366542853386
gcloud beta lifesciences operations list
Worker released
Stopped running "snakejob-plot_oncoprint-1": ing/dna-seq-varlociraptor/plots/oncoprint/present.pdf
jobid: 0
wildcards: event=present
Downloading from remote: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.tsv
Finished download.
Activating conda environment: /workdir/.snakemake/conda/f859ed29
Loading required package: grid
========================================
ComplexHeatmap version 2.2.0
Bioconductor page: http://bioconductor.org/packages/ComplexHeatmap/
Github page: https://github.com/jokergoo/ComplexHeatmap
Documentation: http://jokergoo.github.io/ComplexHeatmap-reference
If you use it in published research, please cite:
Gu, Z. Complex heatmaps reveal patterns and correlations in multidimensional
genomic data. Bioinformatics 2016.
========================================
Uploading to remote: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.pdf
Finished upload.
[Sat Feb 1 19:38:06 2020]
Finished job 0.
1 of 1 steps (100%) done
Complete log: /workdir/.snakemake/log/2020-02-01T193600.692552.snakemake.log
Started running "snakejob-plot_oncoprint-1"
Stopped pulling "snakemake/snakemake:v5.10.0"
Started pulling "snakemake/snakemake:v5.10.0"
Worker "google-pipelines-worker-77c3e460b711dc13d5d7a6910e0ef2d5" assigned in "us-west1-c"
[Sat Feb 1 12:38:11 2020]
Finished job 1.
2 of 3 steps (67%) done
[Sat Feb 1 12:38:11 2020]
localrule all:
input: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.pdf
jobid: 0
Downloading from remote: snakemake-testing/dna-seq-varlociraptor/plots/oncoprint/present.pdf
Finished download.
[Sat Feb 1 12:38:11 2020]
Finished job 0.
3 of 3 steps (100%) done
Complete log: /home/vanessa/Documents/Dropbox/Code/Python/snakemake/snakemake-tutorials/dna-seq-varlociraptor/dna-seq-varlociraptor/.snakemake/log/2020-02-01T123026.287730.snakemake.log