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Add docker images, following what was done for branchwater Prefer sralite format, we get same data but with smaller downloads: https://github.com/ncbi/workshop-asm-ngs-2024/wiki/3.3-Using-SRAToolkit-to-retrieve-Data#approach-3-force-toolkit-to-retrieve-sra-lite-format
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| !wort/ | ||
| !pixi.lock | ||
| !config/ | ||
| !migrations/ | ||
| !wortapp.py | ||
| !pyproject.toml | ||
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| # Based on | ||
| # - https://docs.github.com/en/actions/use-cases-and-examples/publishing-packages/publishing-docker-images | ||
| # - https://docs.docker.com/build/ci/github-actions/multi-platform/#distribute-build-across-multiple-runners | ||
| # and the branchwater config | ||
| # - https://github.com/sourmash-bio/branchwater/blob/main/.github/workflows/docker-images.yml | ||
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| name: Create and publish Docker images | ||
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| on: | ||
| push: | ||
| branches: | ||
| - 'main' | ||
| tags: | ||
| - 'v*' | ||
| pull_request: | ||
| paths: | ||
| - .github/workflows/docker-images.yml | ||
| - Dockerfile | ||
| ## disabling for most PRs, too many builds | ||
| # branches: | ||
| # - 'main' | ||
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| env: | ||
| REGISTRY: ghcr.io | ||
| IMAGE_NAME: ${{ github.repository }} | ||
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| jobs: | ||
| build: | ||
| runs-on: ${{ matrix.os }} | ||
| strategy: | ||
| matrix: | ||
| target: [web, worker] | ||
| platform: | ||
| - linux/amd64 | ||
| - linux/arm64 | ||
| include: | ||
| - platform: linux/amd64 | ||
| os: ubuntu-latest | ||
| - platform: linux/arm64 | ||
| os: ubuntu-24.04-arm | ||
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| permissions: | ||
| contents: read | ||
| packages: write | ||
| id-token: write | ||
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| steps: | ||
| - name: Delete huge unnecessary tools folder | ||
| run: | | ||
| rm -rf /opt/hostedtoolcache | ||
| cd /opt | ||
| find . -maxdepth 1 -mindepth 1 '!' -path ./containerd '!' -path ./actionarchivecache '!' -path ./runner '!' -path ./runner-cache -exec rm -rf '{}' ';' | ||
| - name: Checkout repository | ||
| uses: actions/checkout@85e6279cec87321a52edac9c87bce653a07cf6c2 | ||
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||
| - name: Log in to the Container registry | ||
| uses: docker/login-action@327cd5a69de6c009b9ce71bce8395f28e651bf99 | ||
| with: | ||
| registry: ${{ env.REGISTRY }} | ||
| username: ${{ github.actor }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
|
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||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@6524bf65af31da8d45b59e8c27de4bd072b392f5 | ||
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||
| - name: Prepare | ||
| run: | | ||
| platform=${{ matrix.platform }} | ||
| echo "PLATFORM_PAIR=${platform//\//-}" >> $GITHUB_ENV | ||
| - name: Extract metadata (tags, labels) for Docker | ||
| id: meta | ||
| uses: docker/metadata-action@8e1d5461f02b7886d3c1a774bfbd873650445aa2 | ||
| with: | ||
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | ||
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| - name: Build and push by digest | ||
| id: build | ||
| uses: docker/build-push-action@ca877d9245402d1537745e0e356eab47c3520991 | ||
| with: | ||
| context: . | ||
| platforms: ${{ matrix.platform }} | ||
| labels: ${{ steps.meta.outputs.labels }} | ||
| target: ${{ matrix.target }} | ||
| outputs: type=image,"name=${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}",push-by-digest=true,name-canonical=true,push=true | ||
| cache-from: type=gha | ||
| cache-to: type=gha,mode=max | ||
| # don't push on PRs | ||
| push: ${{ ! startsWith(github.ref, 'refs/pull/') }} | ||
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| - name: Export digest | ||
| run: | | ||
| mkdir -p ${{ runner.temp }}/digests | ||
| digest="${{ steps.build.outputs.digest }}" | ||
| touch "${{ runner.temp }}/digests/${digest#sha256:}" | ||
| - name: Upload digest | ||
| uses: actions/upload-artifact@65c4c4a1ddee5b72f698fdd19549f0f0fb45cf08 | ||
| with: | ||
| name: digests-${{ matrix.target }}-${{ env.PLATFORM_PAIR }} | ||
| path: ${{ runner.temp }}/digests/* | ||
| if-no-files-found: error | ||
| retention-days: 1 | ||
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| merge: | ||
| runs-on: ubuntu-latest | ||
| # avoid tagging on PRs | ||
| if: ${{ ! startsWith(github.ref, 'refs/pull/') }} | ||
| needs: | ||
| - build | ||
|
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| strategy: | ||
| matrix: | ||
| target: [web, worker] | ||
|
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| permissions: | ||
| contents: read | ||
| packages: write | ||
| attestations: write | ||
| id-token: write | ||
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| steps: | ||
| - name: Download digests | ||
| uses: actions/download-artifact@fa0a91b85d4f404e444e00e005971372dc801d16 | ||
| with: | ||
| path: ${{ runner.temp }}/digests | ||
| pattern: digests-${{ matrix.target }}-* | ||
| merge-multiple: true | ||
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||
| - name: Log in to the Container registry | ||
| uses: docker/login-action@327cd5a69de6c009b9ce71bce8395f28e651bf99 | ||
| with: | ||
| registry: ${{ env.REGISTRY }} | ||
| username: ${{ github.actor }} | ||
| password: ${{ secrets.GITHUB_TOKEN }} | ||
|
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||
| - name: Set up Docker Buildx | ||
| uses: docker/setup-buildx-action@6524bf65af31da8d45b59e8c27de4bd072b392f5 | ||
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||
| - name: Extract metadata (tags, labels) for Docker | ||
| id: meta | ||
| uses: docker/metadata-action@8e1d5461f02b7886d3c1a774bfbd873650445aa2 | ||
| with: | ||
| images: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | ||
| tags: | | ||
| type=ref,event=branch,prefix=${{ matrix.target }}- | ||
| type=ref,event=pr,prefix=${{ matrix.target }}-pr- | ||
| type=semver,prefix=${{ matrix.target }}-,pattern={{version}} | ||
| - name: Create manifest list and push | ||
| working-directory: ${{ runner.temp }}/digests | ||
| run: | | ||
| docker buildx imagetools create $(jq -cr '.tags | map("-t " + .) | join(" ")' <<< "$DOCKER_METADATA_OUTPUT_JSON") \ | ||
| $(printf '${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}@sha256:%s ' *) | ||
| - name: Inspect image | ||
| run: | | ||
| docker buildx imagetools inspect ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }}:${{ steps.meta.outputs.version }} | ||
| # - name: Generate artifact attestation | ||
| # uses: actions/attest-build-provenance@v2 | ||
| # with: | ||
| # subject-name: ${{ env.REGISTRY }}/${{ env.IMAGE_NAME }} | ||
| # subject-digest: ${{ steps.build.outputs.digest }} | ||
| # push-to-registry: true |
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