fix: fix init with draws or fit object and without .stan file #2318
Workflow file for this run
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| --- | |
| # Github Actions workflow to check CmdStanR | |
| # yamllint disable rule:line-length | |
| name: Unit tests | |
| 'on': | |
| push: | |
| branches: | |
| - master | |
| pull_request: | |
| branches: | |
| - master | |
| workflow_dispatch: | |
| inputs: | |
| tarball_url: | |
| description: 'CmdStan tarball URL to test with.' | |
| required: false | |
| default: '' | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| jobs: | |
| R-CMD-check: | |
| if: "! contains(github.event.head_commit.message, '[ci skip]')" | |
| runs-on: ${{ matrix.config.os }} | |
| name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| config: | |
| - {os: macOS-latest, r: 'devel', opencl: true} | |
| - {os: macOS-latest, r: 'release', opencl: true} | |
| - {os: macos-26, r: 'release', opencl: false} | |
| - {os: macos-15-intel, r: 'release', opencl: false} | |
| - {os: windows-latest, r: 'devel' } | |
| - {os: windows-latest, r: 'release'} | |
| - {os: windows-2022, r: '4.1'} | |
| - {os: windows-latest, r: 'oldrel'} | |
| - {os: ubuntu-latest, r: 'devel', opencl: true} | |
| - {os: ubuntu-latest, r: 'release', opencl: true} | |
| - {os: ubuntu-latest, r: 'oldrel', opencl: true} | |
| env: | |
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| NOT_CRAN: true | |
| CMDSTANR_OPENCL_TESTS: ${{ matrix.config.opencl }} | |
| CMDSTAN_TEST_TARBALL_URL: ${{ github.event.inputs.tarball_url }} | |
| PKG_SYSREQS_DB_UPDATE_TIMEOUT: 30s | |
| steps: | |
| - name: cmdstan env vars | |
| run: | | |
| echo "CMDSTAN_PATH=${HOME}/.cmdstan" >> $GITHUB_ENV | |
| shell: bash | |
| - uses: actions/checkout@v6 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: ${{ matrix.config.r }} | |
| - name: Install R Package Build Dependencies on MacOS | |
| if: ${{ runner.os == 'macOS' }} | |
| uses: r-hub/actions/setup-r-sysreqs@v1 | |
| with: | |
| type: 'minimal' | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| cache: "always" | |
| extra-packages: any::rcmdcheck, local::. | |
| - name: Debug Windows toolchain resolution | |
| if: ${{ runner.os == 'Windows' }} | |
| run: | | |
| rtools_home <- cmdstanr:::rtools4x_home_path() | |
| candidates <- cmdstanr:::rtools4x_toolchain_candidates() | |
| selected <- cmdstanr:::rtools4x_toolchain_path() | |
| cat("R version: ", as.character(getRversion()), "\n", sep = "") | |
| cat("Rtools home: ", rtools_home, "\n", sep = "") | |
| cat("Toolchain candidates:\n") | |
| if (length(candidates) == 0) { | |
| cat(" - <none>\n") | |
| } else { | |
| cat(paste0(" - ", candidates), sep = "\n") | |
| cat("\n") | |
| } | |
| cat("Selected toolchain: ", selected, "\n", sep = "") | |
| selected_ok <- cmdstanr:::is_rtools4x_toolchain_usable(selected) | |
| if (!selected_ok) { | |
| stop("Resolved Windows toolchain path is not usable.") | |
| } | |
| shell: Rscript {0} | |
| - name: Install POCL on Ubuntu Runners | |
| if: ${{ matrix.config.os == 'ubuntu-latest' }} | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y ocl-icd-opencl-dev pocl-opencl-icd | |
| shell: bash | |
| - name: Install POCL on MacOS Runners | |
| if: ${{ matrix.config.os == 'macOS-latest' }} | |
| run: | | |
| brew install pocl | |
| # Set LDLIBS_OPENCL environment variable so that CPU OpenCL is found | |
| # instead of Apple's GPU OpenCL - which does not support double precision | |
| echo "LDLIBS_OPENCL=-L'/opt/homebrew/opt/opencl-icd-loader/lib' -lOpenCL" >> $GITHUB_ENV | |
| shell: bash | |
| - name: Install cmdstan | |
| run: | | |
| cmdstanr::check_cmdstan_toolchain() | |
| tarball_url <- Sys.getenv("CMDSTAN_TEST_TARBALL_URL") | |
| if (nzchar(tarball_url)) { | |
| cmdstanr::install_cmdstan( | |
| cores = 2, | |
| overwrite = TRUE, | |
| release_url = tarball_url | |
| ) | |
| } else { | |
| cmdstanr::install_cmdstan(cores = 2) | |
| } | |
| shell: Rscript {0} | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - uses: r-lib/actions/check-r-package@v2 | |
| env: | |
| _R_CHECK_CRAN_INCOMING_: false | |
| - name: Show testthat output | |
| if: always() | |
| run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
| shell: bash | |
| - name: Upload check results | |
| if: failure() | |
| uses: actions/upload-artifact@v7 | |
| with: | |
| name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
| path: check |