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fixes
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aleslamitz committed Feb 6, 2024
1 parent 103fa3f commit 26975ea
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Showing 3 changed files with 9 additions and 33 deletions.
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Original file line number Diff line number Diff line change
Expand Up @@ -1104,10 +1104,6 @@ def _compute_observation_log_weights(step,
observation_idx = step // num_transitions_per_observation
observation = tf.nest.map_structure(
lambda x, step=step: tf.gather(x, observation_idx), observations)
if particles_dim != 0:
observation = tf.nest.map_structure(
lambda x: tf.expand_dims(x, axis=particles_dim), observation
)

log_weights = observation_fn(step, particles).log_prob(observation)
return tf.where(step_has_observation,
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Original file line number Diff line number Diff line change
Expand Up @@ -203,15 +203,11 @@ def transition_fn(_, previous_state):
def observation_fn(_, state):
return normal.Normal(loc=state['position'], scale=0.1)

# Batch of synthetic observations, .
true_initial_positions = np.random.randn(*batch_shape).astype(self.dtype)
true_velocities = 0.1 * np.random.randn(
*batch_shape).astype(self.dtype)
# Batch of synthetic observations
true_initial_positions = np.random.randn()
true_velocities = 0.1 * np.random.randn()
observed_positions = (
true_velocities *
np.arange(num_timesteps).astype(
self.dtype)[..., tf.newaxis, tf.newaxis] +
true_initial_positions)
true_velocities * np.arange(num_timesteps).astype(self.dtype) + true_initial_positions)

(particles, log_weights, parent_indices,
incremental_log_marginal_likelihoods) = self.evaluate(
Expand Down Expand Up @@ -242,20 +238,6 @@ def observation_fn(_, state):
self.assertAllEqual(incremental_log_marginal_likelihoods.shape,
[num_timesteps] + batch_shape)

self.assertAllClose(
self.evaluate(
tf.reduce_sum(tf.exp(log_weights) *
particles['position'], axis=2)),
observed_positions,
atol=0.3)

velocity_means = tf.reduce_sum(tf.exp(log_weights) *
particles['velocity'], axis=2)

self.assertAllClose(
self.evaluate(tf.reduce_mean(velocity_means, axis=0)),
true_velocities, atol=0.05)

# Uncertainty in velocity should decrease over time.
velocity_stddev = self.evaluate(
tf.math.reduce_std(particles['velocity'], axis=2))
Expand Down Expand Up @@ -743,7 +725,7 @@ def particle_dynamics(params, _, previous_state):
broadcasted_params = tf.broadcast_to(reshaped_params,
previous_state.shape)
reshaped_dist = independent.Independent(
normal.Normal(previous_state + broadcasted_params + 1, 0.1),
normal.Normal(previous_state + params[..., tf.newaxis, tf.newaxis] + 1, 0.1),
reinterpreted_batch_ndims=1
)
return reshaped_dist
Expand All @@ -754,8 +736,7 @@ def rejuvenation_criterion(step, state):
tf.equal(tf.math.mod(step, tf.constant(2)), tf.constant(0)),
tf.not_equal(state.extra[0], tf.constant(0))
)
return tf.cond(cond, lambda: tf.constant(True),
lambda: tf.constant(False))
return cond

observations = tf.stack([tf.range(15, dtype=tf.float32),
tf.range(15, dtype=tf.float32)], axis=1)
Expand All @@ -768,10 +749,9 @@ def rejuvenation_criterion(step, state):

params, _ = self.evaluate(particle_filter.smc_squared(
observations=observations,
inner_initial_state_prior=lambda _, params:
mvn_diag.MultivariateNormalDiag(
loc=loc, scale_diag=scale_diag
),
inner_initial_state_prior=lambda _, params: mvn_diag.MultivariateNormalDiag(
loc=tf.broadcast_to([0., 0.], params.shape + [2]),
scale_diag=tf.broadcast_to([0.01, 0.01], params.shape + [2])),
initial_parameter_prior=normal.Normal(5., 0.5),
num_outer_particles=num_outer_particles,
num_inner_particles=num_inner_particles,
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