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- .pre-commit-config.yaml+3-3
- CHANGELOG.md+20
- README.md+32-2
- docs/_static/tutorial_images/ehrdata_logo.png
- docs/_static/tutorial_images/ehrdata_logo_X.png
- docs/_static/tutorial_images/ehrdata_logo_layers.png
- docs/_static/tutorial_images/ehrdata_logo_layers_obs_var_tem.png
- docs/_static/tutorial_images/ehrdata_logo_layers_obs_var_tem_obsm_varm.png
- docs/_static/tutorial_images/ehrdata_logo_layers_obs_var_tem_obsm_varm_uns.png
- docs/_static/tutorial_images/ehrdata_logo_layers_obs_var_tem_obsm_varm_uns_2D_3D.png
- docs/_static/tutorial_images/ehrdata_logo_layers_obs_var_tem_obsm_varm_uns_multilayer.png
- docs/_static/tutorial_images/ehrdata_logo_layers_obs_var_tem_slice.png
- docs/_static/tutorial_images/ehrdata_logo_multilayer_concept.png
- docs/_templates/autosummary/class.rst+12-28
- docs/_templates/autosummary/property.rst+5
- docs/conf.py+5
- docs/extensions/skip_inherited.py+11-6
- docs/tutorials/getting_started.ipynb+81-111
- docs/tutorials/interactive_visualization.ipynb+7-9
- docs/tutorials/lamindb.ipynb+21-101
- docs/tutorials/omop_intro.ipynb+102-123
- docs/tutorials/omop_ml.ipynb+71-57
- docs/tutorials/real_dataset_example_physionet2019.ipynb+33-36
- pyproject.toml+4-1
- src/ehrdata/_feature_types.py+11-9
- src/ehrdata/_move_data.py+2-2
- src/ehrdata/_types.py+5-2
- src/ehrdata/core/ehrdata.py+53-10
- src/ehrdata/dt/datasets.py+11-10
- src/ehrdata/integrations/vitessce/_config.py+32-17
- src/ehrdata/io/_array_casting.py+8-4
- src/ehrdata/io/_coo_codec.py+152
- src/ehrdata/io/_ondisk.py+63-5
- src/ehrdata/io/h5ed.py+24-6
- src/ehrdata/io/omop/omop.py-2
- src/ehrdata/io/pandas.py+6-9
- src/ehrdata/io/zarr.py+27-6
- tests/conftest.py+40-9
- tests/core/test_core.py+83-100
- tests/dt/test_dt.py+19-12
- tests/integrations/test_vitessce.py+48-8
- tests/io/test_coo_codec.py+53
- tests/io/test_h5ed.py+106
- tests/io/test_zarr.py+97
- tests/test_feature_types.py+44
- tests/test_move_data.py+13
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