Upkeep 2025 04 (#205)

Author: EmilHvitfeldt

.Rbuildignore

@@ -13,3 +13,5 @@
 ^cran-comments\.md$
 ^CRAN-SUBMISSION$
 ^revdep$
+^[\.]?air\.toml$
+^\.vscode$

.github/workflows/R-CMD-check.yaml

@@ -8,8 +8,6 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
-  workflow_dispatch:
 
 name: R-CMD-check.yaml
 
@@ -36,14 +34,11 @@ jobs:
           - {os: ubuntu-latest,  r: 'oldrel-1'}
           - {os: ubuntu-latest,  r: 'oldrel-2'}
           - {os: ubuntu-latest,  r: 'oldrel-3'}
-          #- {os: ubuntu-latest,  r: 'oldrel-4'}
+          - {os: ubuntu-latest,  r: 'oldrel-4'}
 
     env:
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
       R_KEEP_PKG_SOURCE: yes
-      CXX14: g++
-      CXX14STD: -std=c++1y
-      CXX14FLAGS: -Wall -g -02
 
     steps:
       - uses: actions/checkout@v4
@@ -64,8 +59,4 @@ jobs:
       - uses: r-lib/actions/check-r-package@v2
         with:
           upload-snapshots: true
-
-      - name: Show testthat output
-        if: always()
-        run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'

.github/workflows/pkgdown.yaml

@@ -4,7 +4,6 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
   release:
     types: [published]
   workflow_dispatch:

.github/workflows/test-coverage.yaml

@@ -4,7 +4,6 @@ on:
   push:
     branches: [main, master]
   pull_request:
-    branches: [main, master]
 
 name: test-coverage.yaml
 
@@ -35,14 +34,16 @@ jobs:
             clean = FALSE,
             install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
           )
+          print(cov)
           covr::to_cobertura(cov)
         shell: Rscript {0}
 
-      - uses: codecov/codecov-action@v4
+      - uses: codecov/codecov-action@v5
         with:
-          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
-          file: ./cobertura.xml
-          plugin: noop
+          # Fail if error if not on PR, or if on PR and token is given
+          fail_ci_if_error: ${{ github.event_name != 'pull_request' || secrets.CODECOV_TOKEN }}
+          files: ./cobertura.xml
+          plugins: noop
           disable_search: true
           token: ${{ secrets.CODECOV_TOKEN }}
 

.vscode/extensions.json

@@ -0,0 +1,5 @@
+{
+    "recommendations": [
+        "Posit.air-vscode"
+    ]
+}

.vscode/settings.json

@@ -0,0 +1,6 @@
+{
+    "[r]": {
+        "editor.formatOnSave": true,
+        "editor.defaultFormatter": "Posit.air-vscode"
+    }
+}

DESCRIPTION

@@ -5,16 +5,18 @@ Authors@R: c(
     person("Emil", "Hvitfeldt", , "[email protected]", role = c("aut", "cre"),
            comment = c(ORCID = "0000-0002-0679-1945")),
     person("Kelly", "Bodwin", , "[email protected]", role = "aut"),
-    person(given = "Posit Software, PBC", role = c("cph", "fnd"))
+    person("Posit Software, PBC", role = c("cph", "fnd"),
+           comment = c(ROR = "03wc8by49"))
   )
 Description: A common interface to specifying clustering models, in the
     same style as 'parsnip'. Creates unified interface across different
     functions and computational engines.
 License: MIT + file LICENSE
-URL: https://github.com/tidymodels/tidyclust, https://tidyclust.tidymodels.org/
+URL: https://github.com/tidymodels/tidyclust,
+    https://tidyclust.tidymodels.org/
 BugReports: https://github.com/tidymodels/tidyclust/issues
 Depends: 
-    R (>= 3.6)
+    R (>= 4.1)
 Imports: 
     cli (>= 3.0.0),
     dials (>= 1.3.0),
@@ -52,6 +54,7 @@ Suggests:
 Config/Needs/website: pkgdown, tidymodels, tidyverse, palmerpenguins,
     patchwork, ggforce, tidyverse/tidytemplate
 Config/testthat/edition: 3
+Config/usethis/last-upkeep: 2025-04-24
 Encoding: UTF-8
 Roxygen: list(markdown = TRUE)
 RoxygenNote: 7.3.2

LICENSE

@@ -1,2 +1,2 @@
-YEAR: 2023
+YEAR: 2025
 COPYRIGHT HOLDER: tidyclust authors

LICENSE.md

@@ -1,6 +1,6 @@
 # MIT License
 
-Copyright (c) 2023 tidyclust authors
+Copyright (c) 2025 tidyclust authors
 
 Permission is hereby granted, free of charge, to any person obtaining a copy
 of this software and associated documentation files (the "Software"), to deal

R/append.R

@@ -43,8 +43,8 @@ append_metrics <- function(
     return(collection)
   }
 
-  params <- predictions %>%
-    dplyr::select(dplyr::all_of(param_names)) %>%
+  params <- predictions |>
+    dplyr::select(dplyr::all_of(param_names)) |>
     dplyr::distinct()
 
   tmp_est <- metrics(workflow, new_data = rsample::analysis(split))
@@ -67,13 +67,13 @@ append_extracts <- function(
   .config = NULL
 ) {
   extracts <-
-    grid %>%
-      dplyr::bind_cols(labels(split)) %>%
-      dplyr::mutate(
-        .extracts = list(
-          extract_details(workflow, ctrl$extract)
-        )
+    grid |>
+    dplyr::bind_cols(labels(split)) |>
+    dplyr::mutate(
+      .extracts = list(
+        extract_details(workflow, ctrl$extract)
       )
+    )
 
   if (!rlang::is_null(.config)) {
     extracts <- cbind(extracts, .config)