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• Tsdate 0.2.2

  Release to allow dating of tree sequences with historical samples

  Overdue by 7 month(s)

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  Due by November 30, 2024
  0% complete0 open0 closed

• tsdate Version 0.2.0

  Release tsdate version 1.0!

  Overdue by 4 year(s)

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  Due by December 4, 2020

  •8/9 issues closed
  88% complete1 open8 closed

• tsdate Wish List

  Highly desirable items for tsdate: 1. Loopy belief propagation! 2. Further investigate numerical stability issues with empirical data 3. Variable Ne over time 4. Support unary nodes 5. Support non contemporaneous samples 6. Estimate the age of ancient samples using the inferred tree! 7. Outside maximization: how can we improve this method? Should we use mean for nodes in lowest time point?

  No due date

  •9/12 issues closed
  75% complete3 open9 closed

• Prerelease tsdate

  Working version of tsdate suitable for alpha public release.

  Overdue by 5 year(s)

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  Due by December 16, 2019

  •5/5 issues closed
  100% complete0 open5 closed