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add links to other flea repos
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README.md

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@@ -13,19 +13,14 @@ following results:
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- a multiple sequence alignment of high-quality consensus sequences
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for each time point
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- a maximum-likelihood phylogenetic tree, inferred using
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[FastTree](http://www.microbesonline.org/fasttree/)
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2018
- the most recent common ancestor (MRCA) and other inferred ancestor
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sequences
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- a two-dimensional embedding that respects TN93 sequence distances
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- per-site selection pressure, inferred using
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[FUBAR](https://veg.github.io/hyphy-site/methods/selection-methods/),
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and other per-site evolutionary metrics
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- per-segment evolutionary and phenotypic metrics, inferred using
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[HyPhy](http://www.hyphy.org/)
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pipeline has been submitted for publication. A link to the journal
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article will be added here when it is available.
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See also:
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- [flea-server](https://github.com/veg/flea-server)
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- [flea-web-app](https://github.com/veg/flea-web-app)
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Setup
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=====
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- `session.json`: a JSON file to be visualized with
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[`flea-web-app`](https://github.com/veg/flea-web-app).
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- `session.zip`: a zip file with FASTA files for the consensus
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sequences, ancestors, and MRCA, and a Newick file containing the
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rooted phylogenetic tree.
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rooted phylogenetic tree.
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These files can be served with
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[flea-server](https://github.com/veg/flea-server) and visualized with
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[flea-web-app](https://github.com/veg/flea-web-app).

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