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yitzchakyitzchak
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Update docker
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‎.github/workflows/docker.yml

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name: Publish Docker image
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on:
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workflow_dispatch:
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push:
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branches: [main]
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schedule:
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- cron: '0 0 * * 1'
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jobs:
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push_to_registry:
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name: Push Docker image
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runs-on: ubuntu-latest
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steps:
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- name: Set up Docker Buildx
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uses: docker/setup-buildx-action@v3
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- name: Log in to Docker Hub
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uses: docker/login-action@v3
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with:
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registry: ghcr.io
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username: ${{ github.actor }}
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password: ${{ secrets.GITHUB_TOKEN }}
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- name: Extract metadata (tags, labels) for Docker
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id: meta
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uses: docker/metadata-action@v5
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with:
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images: ghcr.io/yitzchak/common-lisp-jupyter
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tags: |
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type=raw,value=latest
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- name: Build and push Docker image
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uses: docker/build-push-action@v5
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with:
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push: true
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tags: ${{ steps.meta.outputs.tags }}
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labels: ${{ steps.meta.outputs.labels }}

‎Dockerfile

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FROM ubuntu:focal
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FROM ghcr.io/yitzchak/archlinux-cl:latest
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SHELL ["/bin/bash", "-c"]
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RUN sudo pacman -Syu --noconfirm jupyterlab jupyter-console jupyterlab-widgets
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ARG NB_USER=jovyan
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ARG NB_UID=1000
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COPY . /home/root/quicklisp/local-projects/common-lisp-jupyter
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ENV CCL_VERSION "1.12.1-1"
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ENV LLVM_VERSION "13.r5140.g972b6a3a3471-1"
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ENV CLASP_VERSION "0.4.2.r4473.g7ba57bd76-1"
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ENV DEBIAN_FRONTEND=noninteractive
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ENV USER ${NB_USER}
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ENV HOME /home/${NB_USER}
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ENV PATH "${HOME}/.local/bin:${HOME}/miniconda/bin/:${PATH}"
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RUN dpkg --add-architecture i386 && \
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apt-get update && \
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apt-get dist-upgrade -y && \
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apt-get install -y wget curl jq gpg git ssh sudo nano gettext locales sbcl \
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ecl libzmq3-dev libzmq3-dev:i386 lsb-release && \
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echo 'en_US.UTF-8 UTF-8' >/etc/locale.gen && \
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sudo locale-gen
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RUN wget https://github.com/yitzchak/mpr/releases/download/ccl_${CCL_VERSION}/ccl_${CCL_VERSION}_amd64_ubuntu_focal.deb && \
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wget https://github.com/yitzchak/mpr/releases/download/llvm13_${LLVM_VERSION}/llvm13_${LLVM_VERSION}_amd64_ubuntu_focal.deb && \
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wget https://github.com/yitzchak/mpr/releases/download/clasp-cl-git_${CLASP_VERSION}/clasp-cl-git_${CLASP_VERSION}_amd64_ubuntu_focal.deb && \
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apt-get install -y ./ccl_${CCL_VERSION}_amd64_ubuntu_focal.deb \
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./llvm13_${LLVM_VERSION}_amd64_ubuntu_focal.deb \
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./clasp-cl-git_${CLASP_VERSION}_amd64_ubuntu_focal.deb && \
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rm ccl_${CCL_VERSION}_amd64_ubuntu_focal.deb \
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llvm13_${LLVM_VERSION}_amd64_ubuntu_focal.deb \
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clasp-cl-git_${CLASP_VERSION}_amd64_ubuntu_focal.deb
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RUN useradd --create-home --shell=/bin/false --uid=${NB_UID} ${NB_USER} && \
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usermod -aG sudo $NB_USER && \
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passwd -d $NB_USER
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WORKDIR ${HOME}
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USER ${NB_USER}
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RUN wget https://repo.anaconda.com/miniconda/Miniconda3-py39_4.9.2-Linux-x86_64.sh && \
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bash Miniconda3-py39_4.9.2-Linux-x86_64.sh -b -p $HOME/miniconda && \
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./miniconda/bin/conda init && \
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rm Miniconda3-py39_4.9.2-Linux-x86_64.sh
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RUN conda install -c conda-forge nodejs jupyterlab jupyter_console
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RUN jupyter serverextension enable --user --py jupyterlab; \
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jupyter labextension install @jupyter-widgets/jupyterlab-manager \
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jupyterlab-edit-magic cytoscape-clj kekule-clj resizable-box-clj \
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ngl-clj jupyterlab-debugger-restarts; \
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jupyter nbextension enable --user --py widgetsnbextension; \
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jupyter lab build; \
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curl -kLO https://beta.quicklisp.org/quicklisp.lisp; \
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sbcl --non-interactive --load quicklisp.lisp \
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--eval "(quicklisp-quickstart:install)" \
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--eval "(ql-util:without-prompting (ql:add-to-init-file))"; \
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ccl --load quicklisp/setup.lisp \
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--eval "(ql-util:without-prompting (ql:add-to-init-file))" \
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--eval "(uiop:quit)"; \
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iclasp-boehmprecise --non-interactive --load quicklisp/setup.lisp \
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--eval "(ql-util:without-prompting (ql:add-to-init-file))"; \
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ecl --load quicklisp/setup.lisp \
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--eval "(ql-util:without-prompting (ql:add-to-init-file))" \
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--eval "(uiop:quit)"
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USER root
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COPY . ${HOME}/quicklisp/local-projects/common-lisp-jupyter
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RUN chown -R ${NB_UID} quicklisp/local-projects/common-lisp-jupyter && \
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chgrp -R ${NB_USER} quicklisp/local-projects/common-lisp-jupyter
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USER ${NB_USER}
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RUN git clone https://github.com/yitzchak/shasht.git ~/quicklisp/local-projects/shasht; \
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git clone https://github.com/yitzchak/cytoscape-clj.git ~/quicklisp/local-projects/cytoscape-clj; \
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mv ~/quicklisp/local-projects/common-lisp-jupyter/examples ~/lab; \
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mv ~/quicklisp/local-projects/cytoscape-clj/examples ~/lab/cytoscape-clj; \
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git clone https://github.com/yitzchak/kekule-clj.git ~/quicklisp/local-projects/kekule-clj; \
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mv ~/quicklisp/local-projects/kekule-clj/examples ~/lab/kekule-clj; \
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RUN git clone https://github.com/yitzchak/delta-vega.git ~/quicklisp/local-projects/delta-vega; \
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git clone https://github.com/yitzchak/resizable-box-clj.git ~/quicklisp/local-projects/resizable-box-clj; \
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git clone https://github.com/yitzchak/ngl-clj.git ~/quicklisp/local-projects/ngl-clj; \
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mv ~/quicklisp/local-projects/ngl-clj/examples ~/lab/ngl-clj; \
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sbcl --non-interactive \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj))" \
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--eval "(clj:install :use-implementation t)"; \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj :delta-vega))" \
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--eval "(clj:install :implementation t)"; \
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abcl --batch \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj :delta-vega))" \
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--eval "(clj:install :implementation t)"; \
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ccl \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj))" \
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--eval "(clj:install :use-implementation t)" \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj :delta-vega))" \
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--eval "(clj:install :implementation t)"; \
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--eval "(uiop:quit)"; \
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iclasp-boehmprecise --non-interactive \
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--eval "(ql:quickload :common-lisp-jupyter)" \
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--eval "(clj:install :use-implementation t)"; \
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iclasp-boehmprecise --non-interactive \
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--eval "(ql:quickload '(:cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj))"; \
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clasp --non-interactive \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj :delta-vega))" \
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--eval "(clj:install :implementation t)"; \
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ecl \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj))" \
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--eval "(clj:install :use-implementation t)" \
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--eval "(ql:quickload '(:common-lisp-jupyter :cytoscape-clj :kekule-clj :resizable-box-clj :ngl-clj :delta-vega))" \
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--eval "(clj:install :implementation t)"; \
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--eval "(uiop:quit)"
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WORKDIR ${HOME}/lab
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