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Summary

  • add a cron-based GitHub Actions workflow to verify conda installations on Linux and macOS
  • ensure the workflow also runs on pull requests

Testing

  • pre-commit run --files .github/workflows/test_conda_install.yml
  • pytest tests/benchmark_models/test_petab_benchmark.py -k Boehm_JProteomeRes2014
  • pytest tests/benchmark_models/test_petab_benchmark_jax.py -k Boehm_JProteomeRes2014

https://chatgpt.com/codex/tasks/task_b_685d2741a818832ba131032a356886d8

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codecov bot commented Jun 26, 2025

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 75.76%. Comparing base (a386ba7) to head (f122de0).

Additional details and impacted files

Impacted file tree graph

@@            Coverage Diff             @@
##             main    #2839      +/-   ##
==========================================
- Coverage   76.48%   75.76%   -0.73%     
==========================================
  Files         307      307              
  Lines       20022    20022              
  Branches     1500     1500              
==========================================
- Hits        15314    15169     -145     
- Misses       4695     4840     +145     
  Partials       13       13              
Flag Coverage Δ
cpp 71.93% <ø> (-0.06%) ⬇️
cpp_python 38.53% <ø> (ø)
petab 39.20% <ø> (ø)
python 69.51% <ø> (-0.06%) ⬇️
sbmlsuite-jax ?

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see 7 files with indirect coverage changes

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sonarqubecloud bot commented Jul 2, 2025

@dweindl dweindl linked an issue Jul 17, 2025 that may be closed by this pull request
@dweindl dweindl force-pushed the 92qzwt-codex/add-cron-run-github-action-for-amici-installation branch from daec16c to 98a5490 Compare October 20, 2025 08:51
@sonarqubecloud
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Quality Gate Failed Quality Gate failed

Failed conditions
1 Security Hotspot

See analysis details on SonarQube Cloud

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Add tests for installing amici under conda

3 participants