Skip to content

Update changelog and citation metadata for v1.4.0#71

Merged
Adamtaranto merged 2 commits into
mainfrom
copilot/update-changelog-version-1-4-0
Apr 20, 2026
Merged

Update changelog and citation metadata for v1.4.0#71
Adamtaranto merged 2 commits into
mainfrom
copilot/update-changelog-version-1-4-0

Conversation

Copy link
Copy Markdown
Contributor

Copilot AI commented Apr 20, 2026

Adds the v1.4.0 changelog entry and bumps CITATION.cff to reflect the new release, covering changes shipped in PR #69.

CHANGELOG.md

New [1.4.0] - 2026-04-20 section documenting:

Added

  • --split-paired-output (tirmite-search): splits hits into <prefix>_left_hits.tab / <prefix>_right_hits.tab by pairing map role; requires --pairing-map
  • filter_hits_to_pairing_map_models: drops hits from models absent in the pairing map before any downstream filtering
  • SearchFilterSummary + log_filter_summary: structured per-step filter statistics (model exclusion → nested removal → cross-model overlap)

Fixed

  • Max-offset anchor filter incorrectly applied to same-strand symmetric (F,F / R,R) pairs without a pairing map
  • Max-offset anchor filter broken for asymmetrical model pairs in tirmite-search

CITATION.cff

  • version: 1.3.01.4.0
  • date-released: 2026-01-142026-04-20

Copilot AI linked an issue Apr 20, 2026 that may be closed by this pull request
Copilot AI changed the title [WIP] Update changelog for version 1.4.0 release Update changelog and citation metadata for v1.4.0 Apr 20, 2026
Copilot AI requested a review from Adamtaranto April 20, 2026 07:17
@Adamtaranto Adamtaranto marked this pull request as ready for review April 20, 2026 07:21
@Adamtaranto Adamtaranto merged commit ff26796 into main Apr 20, 2026
@Adamtaranto Adamtaranto deleted the copilot/update-changelog-version-1-4-0 branch April 20, 2026 07:22
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

Update changelog

2 participants