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Inquiry about manually update VIBRANT database

Status: Open.

#107 In AnantharamanLab/VIBRANT;

· Xuyang-Feng opened on Mar 25, 2025

python VIBRANT_setup.py or download-db.sh

Status: Open.

#106 In AnantharamanLab/VIBRANT;

· bo-is opened on Feb 25, 2025

V-score cut off employed by vibrant

Status: Open.

#105 In AnantharamanLab/VIBRANT;

· ShailNair opened on Feb 14, 2025

Could not get any result from my IDBA-UD contig files generated from Shogun metagenomic data

Status: Open.

#103 In AnantharamanLab/VIBRANT;

· shankhanath opened on Jan 2, 2025

for the 'useful file'

Status: Open.

#102 In AnantharamanLab/VIBRANT;

· deadblackhole opened on Jan 2, 2025

'type' object is not subscriptable

Status: Open.

#100 In AnantharamanLab/VIBRANT;

· yqy6611 opened on Oct 14, 2024

VIBRANT error: could not identify Pfam HMM files in database directory. Please run VIBRANT_setup.py - After download-db

Status: Open.

#98 In AnantharamanLab/VIBRANT;

· gadieid opened on Sep 2, 2024

VIBRANT error ouputfile

Status: Open.

#97 In AnantharamanLab/VIBRANT;

· Xuyang-Feng opened on Jul 17, 2024

gff file is blank

Status: Open.

#96 In AnantharamanLab/VIBRANT;

· DeaconOfBiology opened on Jun 13, 2024

VIBRANT Error: HMMER3 is not installed or not in $PATH. Please install HMMER3.

Status: Open.

#95 In AnantharamanLab/VIBRANT;

· mwylerCH opened on May 24, 2024

Contig with no annotation result but still be identified as virus

Status: Open.

#93 In AnantharamanLab/VIBRANT;

· quliping opened on Apr 11, 2024

VIBRANT not generating information in outfiles

Status: Open.

#92 In AnantharamanLab/VIBRANT;

· lroppolo opened on Apr 3, 2024