Fix: Throttled {contribute,aggreggate}_retry lambdas for single-catalog reindex in anvilprod (#8257) by nadove-ucsc · Pull Request #8281 · DataBiosphere/azul

nadove-ucsc · 2026-09-04T06:56:25Z

Linked issues: #8257

Checklist

Author

¹ when the issue title describes a problem, the corresponding PR
title is Fix: followed by the issue title

Author (partiality)

Added p tag to titles of partial commits
This PR is labeled partial _{or completely resolves all linked issues}
This PR partially resolves each of the linked issues _{or does not have the partial label}

Author (reindex)

Added r tag to commit title _{or the changes introduced by this PR will not require reindexing of any deployment}
This PR is labeled reindex:dev _{or the changes introduced by it will not require reindexing of dev}
This PR is labeled reindex:anvildev _{or the changes introduced by it will not require reindexing of anvildev}
This PR is labeled reindex:anvilprod _{or the changes introduced by it will not require reindexing of anvilprod}
This PR is labeled reindex:prod _{or the changes introduced by it will not require reindexing of prod}
This PR is labeled reindex:partial and its description documents the specific reindexing procedure for dev, anvildev, anvilprod and prod _{or requires a full reindex or carries none of the labels reindex:dev, reindex:anvildev, reindex:anvilprod and reindex:prod}

Author (mirror)

This PR is labeled mirror:dev _{or the changes introduced by it will not require mirroring of dev}
This PR is labeled mirror:anvildev _{or the changes introduced by it will not require mirroring of anvildev}
This PR is labeled mirror:anvilprod _{or the changes introduced by it will not require mirroring of anvilprod}
This PR is labeled mirror:prod _{or the changes introduced by it will not require mirroring of prod}
This PR is labeled mirror:partial and its description documents the specific mirroring procedure for dev, anvildev, anvilprod and prod _{or requires a full mirroring or carries none of the labels mirror:dev, mirror:anvildev, mirror:anvilprod and mirror:prod}

Author (API changes)

This PR and its linked issues are labeled API _{or this PR does not modify a REST API}
Added a (A) tag to commit title for backwards (in)compatible changes _{or this PR does not modify a REST API}
Updated REST API version number in app.py _{or this PR does not modify a REST API}

Author (upgrading deployments)

Ran make docker_images.json and committed the resulting changes _{or this PR does not modify azul_docker_images, or any other variables referenced in the definition of that variable}
Documented upgrading of deployments in UPGRADING.rst _{or this PR does not require upgrading deployments}
Added u tag to commit title _{or this PR does not require upgrading deployments}
This PR is labeled upgrade _{or does not require upgrading deployments}
This PR is labeled deploy:shared _{or does not modify docker_images.json, and does not require deploying the shared component for any other reason}
This PR is labeled deploy:gitlab _{or does not require deploying the gitlab component}
This PR is labeled deploy:runner _{or does not require deploying the runner image}

Author (hotfixes)

Added F tag to main commit title _{or this PR does not include permanent fix for a temporary hotfix}
Reverted the temporary hotfixes for any linked issues _{or the none of the stable branches (anvilprod and prod) have temporary hotfixes for any of the issues linked to this PR}

Author (before every review)

Rebased PR branch on develop, squashed fixups from prior reviews
Ran make requirements_update _{or this PR does not modify pyproject.toml}
Added R tag to commit title _{or this PR does not modify uv.lock}
This PR is labeled reqs _{or does not modify uv.lock}
make integration_test passes in personal deployment _{or this PR does not modify functionality that could affect the IT outcome}
PR is awaiting requested review from a peer
Status of PR is Review requested
PR is assigned to only the peer and the author

Peer reviewer (after approval)

Note that after requesting changes, the PR must be assigned to only the author.

Actually approved the PR
PR is not a draft
PR is awaiting requested review from system administrator
Status of PR is Review requested
PR is assigned to only the system administrator and the author

System administrator (after approval)

Actually approved the PR
Labeled linked issues as demo or no demo
Commented on linked issues about demo expectations _{or all linked issues are labeled no demo}
Decided if PR can be labeled no sandbox
A comment to this PR details the completed security design review
PR title is appropriate as title of merge commit
N reviews label is accurate
Status of PR is Approved
PR is assigned to only the operator and the author

Operator

Checked reindex:… labels and r commit title tag
Checked mirror:… labels
Checked that demo expectations are clear _{or all linked issues are labeled no demo}
Squashed PR branch and rebased onto develop
Sanity-checked history
Pushed PR branch to GitHub

Operator (deploy `.shared` and `.gitlab` components)

Ran _select dev.shared && CI_COMMIT_REF_NAME=develop make -C terraform/shared apply_keep_unused _{or this PR is not labeled deploy:shared}
Ran _select dev.gitlab && CI_COMMIT_REF_NAME=develop make -C terraform/gitlab apply(an error from _login_docker_gitlab is benign if the instance was stopped for backup) _{or this PR is not labeled deploy:gitlab}
Ran _select anvildev.shared && CI_COMMIT_REF_NAME=develop make -C terraform/shared apply_keep_unused _{or this PR is not labeled deploy:shared}
Ran _select anvildev.gitlab && CI_COMMIT_REF_NAME=develop make -C terraform/gitlab apply(an error from _login_docker_gitlab is benign if the instance was stopped for backup) _{or this PR is not labeled deploy:gitlab}
Checked the items in the next section _{or this PR is labeled deploy:gitlab}
PR is assigned to only the system administrator and the author _{or this PR is not labeled deploy:gitlab}

System administrator (post-deploy of `.gitlab` component)

Background migrations for dev.gitlab are complete _{or this PR is not labeled deploy:gitlab}
Background migrations for anvildev.gitlab are complete _{or this PR is not labeled deploy:gitlab}
PR is assigned to only the operator and the author

Operator (deploy runner image)

Ran _select dev.gitlab && make -C terraform/gitlab/runner _{or this PR is not labeled deploy:runner}
Ran _select anvildev.gitlab && make -C terraform/gitlab/runner _{or this PR is not labeled deploy:runner}

Operator (sandbox build)

Operator (merge the branch)

All status checks passed and the PR is mergeable
The title of the merge commit starts with the title of this PR
Added PR # reference to merge commit title
Collected commit title tags in merge commit title _{but only included p if the PR is also labeled partial}
Pushed merge commit to GitHub
Status of PR is Merged lower
Status of blocked issues is Triage _{or no issues are blocked on the linked issues}

Operator (main build)

Operator (reindex)

Operator (mirroring)

Started mirroring in dev _{or this PR is not labelled mirror:dev}
Started mirroring in anvildev _{or this PR is not labelled mirror:anvildev}
Checked for, triaged and possibly requeued messages in mirror fail queue in dev _{or this PR is not labelled mirror:dev}
Checked for, triaged and possibly requeued messages in mirror fail queue in anvildev _{or this PR is not labelled mirror:anvildev}
Emptied mirror fail queue in dev _{or this PR is not labelled mirror:dev}
Emptied mirror fail queue in anvildev _{or this PR is not labelled mirror:anvildev}

Operator

Propagated the upgrade and API labels to the next promotion PRs _{or this PR carries neither of these labels}
Propagated the deploy:shared, deploy:gitlab, deploy:runner, reindex:partial, reindex:anvilprod, reindex:prod, mirror:partial, mirror:anvilprod and mirror:prod labels to the next promotion PRs _{or this PR carries none of these labels}
Propagated any specific instructions related to the deploy:shared, deploy:gitlab, deploy:runner, reindex:partial, reindex:anvilprod, reindex:prod, mirror:partial, mirror:anvilprod and mirror:prod labels, from the description of this PR to that of the next promotion PRs _{or this PR carries none of these labels}
PR is assigned to no one

Shorthand for review comments

L line is too long
W line wrapping is wrong
Q bad quotes
F other formatting problem

codecov · 2026-09-04T07:09:05Z

Codecov Report

✅ All modified and coverable lines are covered by tests.
✅ Project coverage is 84.79%. Comparing base (b08e0e4) to head (38aeaab).

Additional details and impacted files

@@           Coverage Diff            @@
##           develop    #8281   +/-   ##
========================================
  Coverage    84.79%   84.79%           
========================================
  Files          168      168           
  Lines        25191    25191           
========================================
  Hits         21360    21360           
  Misses        3831     3831

☔ View full report in Codecov by Harness.
📢 Have feedback on the report? Share it here.

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coveralls · 2026-09-04T07:09:17Z

coverage: 84.868%. remained the same — issues/nadove-ucsc/8257-throttled-retry-lambdas into develop

hannes-ucsc · 2026-09-09T23:12:14Z

…og reindex in anvilprod (#8257)

nadove-ucsc self-assigned this Sep 4, 2026

nadove-ucsc linked an issue Sep 4, 2026 that may be closed by this pull request

Throttled {contribute,aggreggate}_retry lambdas for single-catalog reindex in anvilprod #8257

Open

nadove-ucsc marked this pull request as ready for review September 4, 2026 07:47

nadove-ucsc requested a review from hannes-ucsc as a code owner September 4, 2026 07:47

nadove-ucsc assigned hannes-ucsc Sep 4, 2026

hannes-ucsc approved these changes Sep 9, 2026

View reviewed changes

hannes-ucsc added the 0 reviews [process] Lead didn't request any changes label Sep 9, 2026

hannes-ucsc removed their assignment Sep 9, 2026

Fix: Throttled {contribute,aggreggate}_retry lambdas for single-catal…

38aeaab

…og reindex in anvilprod (#8257)

nadove-ucsc force-pushed the issues/nadove-ucsc/8257-throttled-retry-lambdas branch from 18de6d1 to 38aeaab Compare September 10, 2026 06:23

nadove-ucsc added the sandbox [process] Resolution is being verified in sandbox deployment label Sep 10, 2026

nadove-ucsc merged commit b5f53c2 into develop Sep 10, 2026
10 checks passed

nadove-ucsc mentioned this pull request Sep 10, 2026

SI-4 INFORMATION SYSTEM MONITORING #3900

Open

nadove-ucsc deleted the issues/nadove-ucsc/8257-throttled-retry-lambdas branch September 10, 2026 08:36

nadove-ucsc removed their assignment Sep 10, 2026

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Fix: Throttled {contribute,aggreggate}_retry lambdas for single-catalog reindex in anvilprod (#8257) - #8281

Fix: Throttled {contribute,aggreggate}_retry lambdas for single-catalog reindex in anvilprod (#8257)#8281
nadove-ucsc merged 1 commit into
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issues/nadove-ucsc/8257-throttled-retry-lambdas

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Checklist

Author

Author (partiality)

Author (reindex)

Author (mirror)

Author (API changes)

Author (upgrading deployments)

Author (hotfixes)

Author (before every review)

Peer reviewer (after approval)

System administrator (after approval)

Operator

Operator (deploy .shared and .gitlab components)

System administrator (post-deploy of .gitlab component)

Operator (deploy runner image)

Operator (sandbox build)

Operator (merge the branch)

Operator (main build)

Operator (reindex)

Operator (mirroring)

Operator

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hannes-ucsc commented Sep 9, 2026

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nadove-ucsc commented Sep 4, 2026 •

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