ETSIhackers · gschramm · Jul 21, 2025 · Jul 14, 2025 · Jul 14, 2025 · Jul 14, 2025
diff --git a/.gitignore b/.gitignore
@@ -1,5 +1,7 @@
 **/build/
 **/__pycache__/
+*.npy
+.DS_Store
 
 # Common editor backups
 ~$*

diff --git a/.gitmodules b/.gitmodules
@@ -1,4 +0,0 @@
-[submodule "PETSIRD"]
-	path = PETSIRD
-	url = https://github.com/ETSInitiative/PETSIRD
-        branch=main

diff --git a/PETSIRD b/PETSIRD
diff --git a/README.md b/README.md
@@ -5,10 +5,10 @@
 ```
 conda env create -f environment.yml
 conda activate petsird-analytic-simulator
-cd python
+cd python-hackathon-2025
 ```
 
-## Simulate petsird LM data
+## Simulate petsird LM data (work in progress)
 
 ```
 python 01_analytic_petsird_lm_simulator.py
@@ -43,7 +43,7 @@ python 01_analytic_petsird_lm_simulator.py -h
 value > 0 is given via `--num_epochs_mlem`. Otherwise it is skipped to save
 time.
 
-## Run a listmode OSEM recon on the simulated
+## Run a listmode OSEM recon on the simulated (work in progress)
 
 ```
 python 02_lm_osem_recon_simulated_data.py

diff --git a/environment.yml b/environment.yml
@@ -1,13 +1,11 @@
 name: petsird-analytic-simulator
 channels:
   - conda-forge
-  - defaults
 dependencies:
-  - h5py>=3.7.0
-  - ipykernel>=6.19.2
   - numpy>=1.24.3
   - python>=3.11.3
-  - matplotlib~=3.8.0
+  - matplotlib>=3.8.0
   - parallelproj>=1.10.0
   - pymirc>=0.29
-  - petsird~=0.2.1
+  - petsird~=0.7.2
+  - ipython
diff --git a/python/.gitignore b/python/.gitignore
@@ -1,4 +1,2 @@
-*.bin
-*.npy
-tmp
-my_lm_sim/*
+data/*
+.DS_Store