Search results

Env var for --skani_sketch_di

Status: Open.

#691 In Ecogenomics/GTDBTk;

· tseemann opened on Feb 23, 2026

Download

Status: Open.

#690 In Ecogenomics/GTDBTk;

· Gvnngithub opened on Feb 16, 2026

[Typo] "INFO: Sketching refence genomes"

Status: Open.

#689 In Ecogenomics/GTDBTk;

· rubyFeedback opened on Feb 9, 2026

Error: markers.bin not found in the folder

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#688 In Ecogenomics/GTDBTk;

· Louis-MG opened on Feb 9, 2026

MESSAGE: 'NoneType' object has no attribute 'startswith' (When using precomputed skani sketches)

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#687 In Ecogenomics/GTDBTk;

· jolespin opened on Jan 21, 2026

Provide precomputed skani sketches for GTDB representative genomes

Status: Open.

#686 In Ecogenomics/GTDBTk;

· fplazaonate opened on Jan 16, 2026

Create GTDB-tk apptainer

Status: Open.

#685 In Ecogenomics/GTDBTk;

· natchaphon602 opened on Jan 12, 2026

GTDB-tk crashes when run twice with the same output directory

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

next versionUpcoming feature/fix in staging branch.Upcoming feature/fix in staging branch.

Status: Open.

#684 In Ecogenomics/GTDBTk;

· fplazaonate opened on Jan 9, 2026

New 2.6.1 version AttributeError: 'Parallel' object has no attribute '__process_manager'

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#683 In Ecogenomics/GTDBTk;

· KennLu2914 opened on Dec 21, 2025

ERROR: skani returned a non-zero exit code./ERROR: Controlled exit resulting from an unrecoverable error or warning.

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#675 In Ecogenomics/GTDBTk;

· raoyangzhi opened on Nov 23, 2025

GTDB won't stop running and produce results

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#628 In Ecogenomics/GTDBTk;

· lyisrae1 opened on Mar 28, 2025

Total genome counter in log is off (warning message)

errorHelp required for a GTDB-Tk error.Help required for a GTDB-Tk error.

Status: Open.

#585 In Ecogenomics/GTDBTk;

· GabeAl opened on Apr 26, 2024