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Add unify
keyword and default if to true
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Original file line number | Diff line number | Diff line change |
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@@ -15,6 +15,7 @@ using .HeapedVectors | |
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using IntervalArithmetic | ||
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include("utils.jl") | ||
include("optimise.jl") | ||
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Original file line number | Diff line number | Diff line change |
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@@ -0,0 +1,43 @@ | ||
function find_set!(disjoint_sets, i) # path compression | ||
if i != disjoint_sets[i] | ||
disjoint_sets[i] = find_set!(disjoint_sets, disjoint_sets[i]) | ||
end | ||
return disjoint_sets[i] | ||
end | ||
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function add_set!(disjoint_sets, weights_sets, i, j) | ||
i = find_set!(disjoint_sets, i) | ||
j = find_set!(disjoint_sets, j) | ||
if i == j | ||
return true | ||
end | ||
if weights_sets[i] < weights_sets[j] | ||
disjoint_sets[i] = j | ||
weights_sets[j] += weights_sets[i] | ||
else | ||
disjoint_sets[j] = i | ||
weights_sets[i] += weights_sets[j] | ||
end | ||
return false | ||
end | ||
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function unify_boxes(minimisers) | ||
n = length(minimisers) | ||
disjoint_sets = collect(1:n) | ||
weights_sets = ones(Int, n) | ||
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for i in 1:n, j in i+1:n | ||
if !isempty(minimisers[i] ∩ minimisers[j]) | ||
add_set!(disjoint_sets, weights_sets, i, j) | ||
end | ||
end | ||
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for i in 1:n | ||
find_set!(disjoint_sets, i) # to flat the structure | ||
end | ||
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sets = unique(disjoint_sets) # all the unique intervals | ||
components = [findall(==(set), disjoint_sets) for set in sets] # components | ||
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return [reduce(union, @view minimisers[component]) for component in components] | ||
end |
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What is
weights_sets
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Is an optimizations for union-find to make the union and find operations almost constant.
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This is the fastest asymtotically variant known of union-find. The algorithm is described here.