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@JuliaPhylo

JuliaPhylo

A software ecosystem for phylogenetics in Julia
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JuliaPhylo is a software ecosystem for phylogenetics in Julia. 🌴

Welcome! 👋
To get started: see JuliaPhylo's website
Please abide by Julia's community guidelines

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  1. PhyloNetworks.jl PhyloNetworks.jl Public

    PhyloNetworks: a julia package with utilities for phylogenetic networks

    Julia 161 50

  2. PhyloPlots.jl PhyloPlots.jl Public

    Display utilities for phylogenetic trees and networks

    Julia 16 2

  3. PhyloCoalSimulations.jl PhyloCoalSimulations.jl Public

    Julia 14 2

  4. QuartetNetworkGoodnessFit.jl QuartetNetworkGoodnessFit.jl Public

    julia package for phylogenetic networks analyses using 4-taxon subsets.

    Julia 9 1

  5. PhyloGaussianBeliefProp.jl PhyloGaussianBeliefProp.jl Public

    analysis of Gaussian models on phylogenetic networks using belief propagation (aka message passing)

    Julia 7 1

  6. PhyloTraits.jl PhyloTraits.jl Public

    Julia package for the analysis of trait evolution along a phylogeny, including phylogenetic networks.

    Julia 3

Repositories

Showing 10 of 12 repositories
  • SNaQ.jl Public
    JuliaPhylo/SNaQ.jl’s past year of commit activity
    Julia 2 MIT 1 1 2 Updated Mar 25, 2025
  • PhyloNetworks.jl Public

    PhyloNetworks: a julia package with utilities for phylogenetic networks

    JuliaPhylo/PhyloNetworks.jl’s past year of commit activity
    Julia 161 50 17 (1 issue needs help) 4 Updated Mar 25, 2025
  • PhyloTraits.jl Public

    Julia package for the analysis of trait evolution along a phylogeny, including phylogenetic networks.

    JuliaPhylo/PhyloTraits.jl’s past year of commit activity
    Julia 3 MIT 0 0 0 Updated Mar 17, 2025
  • JuliaPhyloWebsite Public

    source files for the JuliaPhylo website

    JuliaPhylo/JuliaPhyloWebsite’s past year of commit activity
    HTML 0 MIT 0 0 0 Updated Mar 17, 2025
  • .github Public

    profile readme for JuliaPhylo organization

    JuliaPhylo/.github’s past year of commit activity
    0 MIT 0 0 0 Updated Mar 15, 2025
  • PhyloGaussianBeliefProp.jl Public

    analysis of Gaussian models on phylogenetic networks using belief propagation (aka message passing)

    JuliaPhylo/PhyloGaussianBeliefProp.jl’s past year of commit activity
    Julia 7 MIT 1 0 2 Updated Mar 13, 2025
  • PhyloUtilities Public

    Tutorial to estimate gene trees and quartet concordance factors.

    JuliaPhylo/PhyloUtilities’s past year of commit activity
    Roff 0 MIT 0 0 0 Updated Mar 4, 2025
  • v0.16PhyloNetworks-wiki-tutorial Public

    This repository contains the wiki tutorial from the PhyloNetworks.jl repository prior to refactoring and is meant to be used with version 0.16 of PhyloNetworks. The tutorial includes a pipeline for estimating a network from sequence alignments.

    JuliaPhylo/v0.16PhyloNetworks-wiki-tutorial’s past year of commit activity
    0 0 0 0 Updated Jan 21, 2025
  • PhyloCoalSimulations.jl Public
    JuliaPhylo/PhyloCoalSimulations.jl’s past year of commit activity
    Julia 14 MIT 2 1 0 Updated Dec 18, 2024
  • PhyLiNC.jl Public

    Estimation of evolutionary networks from DNA sequences, assuming independent sites

    JuliaPhylo/PhyLiNC.jl’s past year of commit activity
    Julia 3 MIT 0 0 1 Updated Dec 14, 2024
View all repositories

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