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@MIC-DKFZ

MIC-DKFZ

Division of Medical Image Computing, German Cancer Research Center (DKFZ)

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  1. nnUNet nnUNet Public

    Python 6.5k 1.9k

  2. batchgenerators batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    Jupyter Notebook 1.1k 226

  3. trixi trixi Public

    Manage your machine learning experiments with trixi - modular, reproducible, high fashion. An experiment infrastructure optimized for PyTorch, but flexible enough to work for your framework and you…

    Python 222 20

  4. TractSeg TractSeg Public

    Automatic White Matter Bundle Segmentation

    Python 235 74

  5. basic_unet_example basic_unet_example Public

    An example project of how to use a U-Net for segmentation on medical images with PyTorch.

    Python 145 40

  6. nnDetection nnDetection Public

    nnDetection is a self-configuring framework for 3D (volumetric) medical object detection which can be applied to new data sets without manual intervention. It includes guides for 12 data sets that …

    Python 571 105

Repositories

Showing 10 of 83 repositories
  • LongiSeg Public
    MIC-DKFZ/LongiSeg’s past year of commit activity
    Python 6 Apache-2.0 0 0 0 Updated Apr 1, 2025
  • LesionLocator Public
    MIC-DKFZ/LesionLocator’s past year of commit activity
    19 1 2 0 Updated Apr 1, 2025
  • Longitudinal-Difference-Weighting Public

    Longitudinal Segmentation of MS Lesions via Temporal Difference Weighting

    MIC-DKFZ/Longitudinal-Difference-Weighting’s past year of commit activity
    Python 4 Apache-2.0 0 0 0 Updated Apr 1, 2025
  • nnUNet Public
    MIC-DKFZ/nnUNet’s past year of commit activity
    Python 6,515 Apache-2.0 1,909 277 (1 issue needs help) 25 Updated Apr 1, 2025
  • napari_toolkit Public
    MIC-DKFZ/napari_toolkit’s past year of commit activity
    Python 3 Apache-2.0 2 0 0 Updated Mar 28, 2025
  • napari-labels Public
    MIC-DKFZ/napari-labels’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 28, 2025
  • napari-camera Public
    MIC-DKFZ/napari-camera’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 27, 2025
  • napari-nninteractive Public
    MIC-DKFZ/napari-nninteractive’s past year of commit activity
    Python 60 Apache-2.0 9 5 2 Updated Mar 26, 2025
  • batchgenerators Public

    A framework for data augmentation for 2D and 3D image classification and segmentation

    MIC-DKFZ/batchgenerators’s past year of commit activity
    Jupyter Notebook 1,127 Apache-2.0 226 39 12 Updated Mar 25, 2025
  • nnInteractive Public

    nnInteractive is a framework for 3D interactive segmentation, supporting intuitive prompts like points, scribbles, bounding boxes, and lasso. Trained on 120+ diverse 3D datasets, it sets a new standard in accuracy, usability, and adaptability for clinical and research applications.

    MIC-DKFZ/nnInteractive’s past year of commit activity
    Python 92 Apache-2.0 10 2 0 Updated Mar 23, 2025
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