Add support for OME-Zarr data#108
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Co-authored-by: GitHub Copilot <copilot@github.com>
Co-authored-by: Copilot <copilot@github.com>
Co-authored-by: GitHub Copilot <copilot@github.com>
Co-authored-by: GitHub Copilot <copilot@github.com>
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Currently considering the correct way of modelling Zarr datasets in Croissant, maybe the https://github.com/MIT-LCP/croissant-baker/blob/main/src/croissant_baker/handlers/parquet_handler.py is a good inspiration |
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for reference https://huggingface.co/datasets/LuciexJune/ome-vip-dataset https://huggingface.co/api/datasets/LuciexJune/ome-vip-dataset/croissant
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xref #49
Initial draft; NOTE: GH copilot support for syntax while I get familiarized with the details.
Test case is a real-world CC0 dataset (https://www.ebi.ac.uk/biostudies/bioimages/studies/S-BIAD1961). Probably a smaller one would be better before pull.
For the nature of (OME)-Zarr, it includes many files.
I'll be working here as a draft PR for transparency, but comments/tips/changes are welcome at any point.
It is not yet comprehensively tested.