Update this branch for testing all recent pull requests & fixing minor issues - #82

Merged

xuyuting merged 189 commits into

Aug 25, 2025

Commits on Aug 9, 2024

Merge pull request #15 from MSDLLCpapers/main
kstone40
authored
fa854a2

Commits on Aug 12, 2024

Update 2_Analysis_and_Visualization.md
xuyuting
authored
4eb8837

Commits on Aug 13, 2024

Commits on Aug 14, 2024

Merge pull request #22 from MSDLLCpapers/testing
kstone40
authored
314d155
Merge pull request #23 from MSDLLCpapers/main
xuyuting
authored
b1c0202
finish wiki/3_Data.md
xuyuting
committed
574702d
Merge pull request #24 from MSDLLCpapers/release_docs
xuyuting
authored
06c4e1f
fix the demo ipynb files and remove outputs to reduce file sizes. Outputs could be found in gh pages
xuyuting
committed
6f2e883

Commits on Aug 15, 2024

Commits on Aug 16, 2024

modifying user guide of acquisition functions (in progress)
xuyuting
committed
69791b2
continue editing 5_AcquisitionFunction.md
xuyuting
committed
3f21b92

Commits on Aug 17, 2024

minor changes to 5_AcquisitionFunction.md (in progress)
xuyuting
committed
5272736

Commits on Aug 18, 2024

revise 3.1 Expected Improvement (EI)
xuyuting
committed
66ec24d
Merge pull request #31 from MSDLLCpapers/main
kstone40
authored
e12cdf3
Renamed help to infobar, updated logo specification and version
kstone40
committed
aea5de5
Fixed ordinal fitting
kstone40
committed
1bf94e7
Fixed linting
kstone40
committed
2ef065e
Ensure categorical parameters strip whitespace
kstone40
committed
4b81551
revise NEI, PI, UCB
xuyuting
committed
b00d887
minor formatting correction
xuyuting
committed
84b0e00
revise Hypervolume Improvement for MOO in 5_AcquisitionFunction.md
xuyuting
committed
d2df76d

Commits on Aug 19, 2024

bugfix for NParEGO: default scalarization_weights is None (random weights); enable user input scalarization_weights (previous missing in _parse_aq_kwargs
xuyuting
committed
fcf8220
bugfix: make sure optim_sequential = False for aq_str in ['NEHVI', 'EHVI']
xuyuting
committed
18e634e
revise MOO section in 5_AcquisitionFunction.md
xuyuting
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a898f35
minor changes
xuyuting
committed
7bec63c
add ACS 2024 presentation to publications.md
xuyuting
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caa6ea6
Merge pull request #32 from MSDLLCpapers/release_docs
xuyuting
authored
7345766
Simplified Xspace saving
kstone40
committed
efe5834
Parameter types inferred based on dtype
kstone40
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ac980f5
Merge pull request #33 from MSDLLCpapers/release_app
kstone40
authored
b02a6c8
Bump version
kstone40
committed
466b9e5
Bump version
kstone40
committed
25d8bb1
Removed javascript, fixed dark mode logo reaction
kstone40
committed
e89140b
Merge pull request #34 from MSDLLCpapers/release_docs
kstone40
authored
edb758a

Commits on Aug 20, 2024

Improved github actions
kstone40
committed
cd8e9ea

Commits on Aug 21, 2024

Removed "v" requirement from tag on CD
kstone40
authored
a8ea740
Merge pull request #36 from MSDLLCpapers/main
kstone40
authored
b130dd3
Added default weights to NParEGO
kstone40
committed
4be7df1
Merge pull request #37 from MSDLLCpapers/bugfix
kstone40
authored
f88ee78
Add pip-caching to CI workflow
kstone40
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78a311e
Merge branch 'main' of https://github.com/MSDLLCpapers/obsidian
kstone40
committed
f14dd3a
Merge pull request #38 from MSDLLCpapers/main
kstone40
authored
fc6836a
Remove pip cache
kstone40
authored
19454a2
PDP ICE plot now works with categorical inputs
kstone40
committed
73efe83
Bump version
kstone40
committed
a97763c
Merge pull request #39 from MSDLLCpapers/main
kstone40
authored
4d47426
Merge pull request #40 from MSDLLCpapers/plotting
kstone40
authored
6d5e912

Commits on Aug 22, 2024

Greatly refactored shap PDP ICE for simplicity
kstone40
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9a6807a
Merge branch 'plotting' of https://github.com/MSDLLCpapers/obsidian into plotting
kstone40
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853c44b
Improved testing coverage of SHAP PDP ICE
kstone40
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f13fd83
Merge pull request #41 from MSDLLCpapers/plotting
kstone40
authored
1f559c1
Removed helper fcn from shap
kstone40
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dea7b8c
Campaign clear data sets iter to 0
kstone40
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1ccaccc
Add MDS plot
kstone40
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93053f6
Merge pull request #42 from MSDLLCpapers/main
kstone40
authored
d7713a0
Merge pull request #43 from MSDLLCpapers/plotting
kstone40
authored
234d287
Added best_X method to campaign
kstone40
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42372b5
Added X_best attributes to optimizer
kstone40
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259280d
Switched all X_ref from X_space.mean to optimizer.X_best_f
kstone40
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3ebce9e
Bump version
kstone40
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1c86a50
Added color_list to branding
kstone40
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db45780
Moved visualize_inputs from MPL to plotly
kstone40
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a96b484
Add linting to CI
kstone40
authored
97372b2
Merge pull request #44 from MSDLLCpapers/main
kstone40
authored
1d5da4a
Merge pull request #45 from MSDLLCpapers/plotting
kstone40
authored
1401260
Added X hoverdata to MDS plot
kstone40
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1af4735
Created product objective
kstone40
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3c47edc
Renamed index/indices to ind for consistency
kstone40
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222927b
Merge pull request #46 from MSDLLCpapers/main
kstone40
authored
598a07d
Merge branch 'bugfix' of https://github.com/MSDLLCpapers/obsidian into bugfix
kstone40
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078d018
Created divide objective
kstone40
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dfe514c
Created Product and Divide objectives
kstone40
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3f591cc
Added repr methods and testing
kstone40
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9a244e8
Hoverdata for MDS plot
kstone40
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230b169
Merge pull request #48 from MSDLLCpapers/bugfix
kstone40
authored
5f45b6c
Merge branch 'main' into plotting
kstone40
authored
82039c0
Merge pull request #49 from MSDLLCpapers/plotting
kstone40
authored
5bd1c4e
Fixed browser tab header for ReadMe in GH docs
kstone40
committed
30203e0

Commits on Aug 26, 2024

Added some figures to static assets for ReadMe
kstone40
committed
f0696d0
Updated readme links with new figures
kstone40
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68e464a

Commits on Sep 7, 2024

Added X_space as property with setter to optimizer
kstone40
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8e1bebc
Fixed typing for surrogate verbose
kstone40
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3df0a77
Added indexing by param name to ParamSpace
kstone40
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6b01351
Added indexing by param name to ParamSpace
kstone40
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beac47b
Cleaned up parse_aq_kwargs
kstone40
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ec2e527
Removed torch device option
kstone40
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8cf1d37
Added search space functionality
kstone40
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42b5615
Removed cuda references
kstone40
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4d72385
Added more outputs for verbose
kstone40
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693c598
Campaign X_space assigned with setter
kstone40
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9ddb75d
Logged search space changes
kstone40
committed
d1d34f5
Merge pull request #52 from MSDLLCpapers/search_space
kstone40
authored
59c374a
Add google analytics
kstone40
committed
6e99ac3
Merge branch 'main' of https://github.com/MSDLLCpapers/obsidian
kstone40
committed
f4c2bc7

Commits on Sep 11, 2024

Bugfix for verbose fstring
Kevin Stone
committed
badf61a
Import target before parameters to fix import bugs
Kevin Stone
committed
da64ed4
Object-oriented constraint definition
Kevin Stone
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ec9d5f8
Created interface class for ParamSpace to resolve circular import with constraints
Kevin Stone
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d7fcbe1
Moved param_class_dict to parameters.config for consistency
Kevin Stone
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0b580a3
Saving and loading of input constraints via ParamSpace
Kevin Stone
committed
0ce6c6c
Clear constraints, add nonlinear constraints to correct spot
Kevin Stone
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ed8abad
Optimizer accepts X_space constraints
Kevin Stone
committed
12c63c1
Fixed mutable default argument for optimizer constraint
Kevin Stone
committed
6b15653
Merge pull request #53 from MSDLLCpapers/main
kstone40
authored
17a1e51
Merge branch 'search_space' of https://github.com/msdllcpapers/obsidian into search_space
Kevin Stone
committed
82e2e7e
ParamSpace with input constraints
Kevin Stone
committed
2de2032
Fix typo
Kevin Stone
committed
689ae8b
Object-oriented output constraints
Kevin Stone
committed
c278709
Merge pull request #55 from MSDLLCpapers/main
xuyuting
authored
9862601
Serializing output constraints via campaign
Kevin Stone
committed
932c838
String repr methods for constraints
Kevin Stone
committed
f7f8db4
Restrict scaling for output constraints to non-objective cases
Kevin Stone
committed
a263eea
Testing for output constraints and serializing
Kevin Stone
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7cb6fba
Documented output constraint changes
Kevin Stone
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21e14fc
Added fixed_var properly to optimizer.maximize
Kevin Stone
committed
8bc6bef

Commits on Sep 12, 2024

Merge pull request #56 from MSDLLCpapers/search_space
kstone40
authored
fb70122
Bump version
Kevin Stone
committed
76112ab
Merge pull request #57 from MSDLLCpapers/main
kstone40
authored
f098d38
Fixed another fstring bug
Kevin Stone
committed
0deb8b1
Merge pull request #58 from MSDLLCpapers/main
kstone40
authored
70d5a26
Merge pull request #59 from MSDLLCpapers/main
kstone40
authored
d98840f
Improved fitting of pytorch surrogates with auto-stopping
Kevin Stone
committed
90516f4
Disabled cache_root for ensemble surrogates
Kevin Stone
committed
6d350a4
Added FantasizeMixIn and reduced posterior samples for DNN
Kevin Stone
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2d87895
Stabilized mean prediction of ensemble surrogates
Kevin Stone
committed
abdcc19

Commits on Sep 13, 2024

Fixed optimizer tests for stochasticity in ensemble predictions
Kevin Stone
committed
3c0b1a5
Enhancements to ensemble surrogates
Kevin Stone
committed
17965cd
fix error in search_space function for Param_Ordinal input
xuyuting
committed
ca94e42
Merge pull request #60 from MSDLLCpapers/bugfix
xuyuting
authored
ca96f31

Commits on Sep 16, 2024

Merge pull request #62 from MSDLLCpapers/main
xuyuting
authored
36890c3

Commits on Sep 17, 2024

when X_ref input is None, use X_best_f. whether plot X_ref only depends on plotRef indicator
xuyuting
committed
30dc2ec
revise the ineq_constraints arg according to the revised Linear_Constraint class
xuyuting
committed
c53198e
remove first cell
xuyuting
committed
3095d6b
Moved cache_root to propery place under noisy aqs
Kevin Stone
committed
8831fa3
Added X_baseline to SF kwargs
Kevin Stone
committed
f49a8b3
Completed fantasize method for DNN surrogate
Kevin Stone
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39dce24
Added user warning to optim_sequential overwrite
Kevin Stone
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34abd09
Removed sklearn from reqs, added try-except ImportError
Kevin Stone
committed
b712c9a
Merge pull request #63 from MSDLLCpapers/surrogate-models
kstone40
authored
1a44adf
Merge pull request #64 from MSDLLCpapers/bugfix
xuyuting
authored
805c9ab
Merge pull request #65 from MSDLLCpapers/main
xuyuting
authored
8a93c76
show X_best_f (if available) as diamond marker on scatter plot in visualize_inputs function
xuyuting
committed
023612e
fix the diamond marker in factor_plot
xuyuting
committed
3c12094
fix lint issues
xuyuting
committed
553d400

Commits on Sep 18, 2024

Commits on Sep 19, 2024

Merge pull request #67 from MSDLLCpapers/main
kstone40
authored
35ae52a
Increased max length of category name
Kevin Stone
committed
958b386
Added warning for combinatorial explosion
Kevin Stone
committed
74b7f32
Merge pull request #68 from MSDLLCpapers/bugfix
kstone40
authored
d3264a1

Commits on Sep 23, 2024

Fix issue of Param_Discrete_Numeric: search_categories init and creation of X_search_t
xuyuting
committed
fb83a60
fix code style
xuyuting
committed
22f9b46
Merge pull request #70 from MSDLLCpapers/bugfix
xuyuting
authored
366a38f

Commits on Oct 8, 2024

avoid warning in campaign.py #93
xuyuting
committed
15b136b
fix optim_progress for moo
xuyuting
committed
24b4852

Commits on Mar 11, 2025

Update param_space.py
xuyuting
authored
8d856ca

Commits on Mar 20, 2025

Improvements to OFAT analysis (target min)
Kevin Stone
committed
48a86e9
Merge branch 'main' of https://github.com/msdllcpapers/obsidian
Kevin Stone
committed
7f5baed
FIxed calc_ofat correlation for aim=min
Kevin Stone
committed
473ef66

Commits on Mar 26, 2025

Merge pull request #73 from MSDLLCpapers/bugfix
xuyuting
authored
022a360

Commits on Apr 9, 2025

Update publications.md
xuyuting
authored
067882d
Update publications.md
xuyuting
authored
157c343
Update publications.md
xuyuting
authored
8e67e7a

Commits on Apr 10, 2025

Improved objectives visualization
Kevin Stone
committed
3766ffd
Merge branch 'main' of https://github.com/msdllcpapers/obsidian
Kevin Stone
committed
474e44e
Bug fix for optim_progress response IDs
Kevin Stone
committed
50cc63c