init python module and created CLI tool for study metadata and data retrieval - #15

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angelphanth wants to merge 42 commits into

mainfrom

Commits on Feb 10, 2025

add args
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init poetry
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making modules
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:see_no_evil:
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adding ruff to dev
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smaller functions
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:memo: update docstrings with copilot
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1af03d7
iteratively save response to json in case of errors (e.g., too many requests)
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add wait_time arg for requests
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0948f9a
smaller functions so can work with json files rather than requesting every time
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:truck: rename
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as module
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3d9f083

Commits on Feb 13, 2025

:heavy_plus_sign: add pyyaml
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:see_no_evil:
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af74be9
:hammer: modify final processing function
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:hammer: add util functions
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58b3207

Commits on Feb 25, 2025

more params
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init
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b77f6f1

Commits on Feb 26, 2025

tidy the joining and filtering of dfs
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:see_no_evil: log files
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3dd0b46
using poetry
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e6512b7
init script to do all with checkpoints
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:bug: fixing
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35b162f

Commits on Feb 27, 2025

:truck: renaming files
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add retrieving sample metadata
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c2accb1
:memo: update description
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init as submod
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cb8a054
done script now testing
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:bug: column renaming
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:construction:
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Commits on Feb 28, 2025

better option for filter_filepaths
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09506f4
:construction: trying to fix a bug .. need to split functions
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6a5755d

Commits on Mar 2, 2025

:construction: there is an issue with outputs
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save data to own folder
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09d11f9

Commits on Jul 25, 2025

:see_no_evil: ignore data files from mgnify
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eac3eff
retest on new biome
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27186b1
moved to mgnifyapi module and altered main() for CLI
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f382231
add project details, create CLI, prep for github actions
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136126b
add project details, create CLI, prep for github actions
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21b7e51
:memo: update with changes but still lots todo
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:construction: playing around and learning
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:memo: mention the logfiles
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