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@OpenMS

OpenMS

OpenMS is an open-source C++ software library for LC-MS data management and analysis
README.md

Welcome to @OpenMS!

@OpenMS is an open-source C++ software library for LC-MS data management and analysis with python wrappers, a large modular toolset and workflows for e.g., Galaxy, KNIME and nextflow.

Here's how to get started:

  • 📚 Browse through the main library code under OpenMS/OpenMS
  • 👩‍💻 Check out the documentation.
  • 🙋‍♀️ Come and say hi on our Discord!
  • 🍿 Tune in for news about developer/user meetings and events, get involved!
  • 🌈 Please abide by our community code of conduct

All Jobs Status

Repository Status
OpenMS Nightly
workflow
workflow
pyOpenMS workflow
Building latest jupyter Notebooks and push to master+ipynb
Build and Test code in notebooks
openms.de Netlify Status
CDash (external server) build status

Pinned Loading

  1. OpenMS OpenMS Public

    The codebase of the OpenMS project

    C++ 522 360

  2. OpenMS-docs OpenMS-docs Public

    OpenMS Documentation.

    CSS 2 27

  3. contrib contrib Public

    Automated CMake build scripts for the OpenMS contrib libraries

    CMake 22

  4. THIRDPARTY THIRDPARTY Public

    External binary dependencies (e.g. search engine binaries) packaged in installers

    2 12

  5. dockerfiles dockerfiles Public archive

    This repository holds Dockerfiles for creating docker images for several OpenMS configurations based on different base images.

    Dockerfile 2 8

  6. pyopenms-docs pyopenms-docs Public

    pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

    Python 49 70

Repositories

Showing 10 of 34 repositories
  • streamlit-deployment Public

    Streamlit deployment with Docker

    OpenMS/streamlit-deployment’s past year of commit activity
    1 9 0 4 Updated Aug 19, 2025
  • FLASHApp Public
    OpenMS/FLASHApp’s past year of commit activity
    Python 0 0 0 5 Updated Aug 19, 2025
  • streamlit-template Public
    OpenMS/streamlit-template’s past year of commit activity
    Python 16 34 32 19 Updated Aug 19, 2025
  • OpenMS Public

    The codebase of the OpenMS project

    OpenMS/OpenMS’s past year of commit activity
    C++ 522 360 646 (18 issues need help) 66 Updated Aug 16, 2025
  • autowrap Public

    Generates Python Extension modules from Cythons PXD files

    OpenMS/autowrap’s past year of commit activity
    C++ 76 22 42 (7 issues need help) 9 Updated Aug 13, 2025
  • pyopenms_viz Public

    Streamlining Mass Spectrometry Data Visualization with Pandas

    OpenMS/pyopenms_viz’s past year of commit activity
    Jupyter Notebook 19 BSD-3-Clause 18 10 (1 issue needs help) 8 Updated Aug 13, 2025
  • mz-calculator Public
    OpenMS/mz-calculator’s past year of commit activity
    Python 1 0 0 5 Updated Aug 12, 2025
  • pyopenms-docs Public

    pyOpenMS readthedocs documentation, additional utilities, addons, scripts, and examples.

    OpenMS/pyopenms-docs’s past year of commit activity
    Python 49 70 47 4 Updated Aug 7, 2025
  • OpenMS-website Public

    Hugo sources for the OpenMS website

    OpenMS/OpenMS-website’s past year of commit activity
    HTML 0 18 11 2 Updated Aug 6, 2025
  • Assets Public

    Additional files (logos, splash screen, icons)

    OpenMS/Assets’s past year of commit activity
    0 2 4 0 Updated Jul 31, 2025
View all repositories

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