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@Pappulab

Pappu Lab

Github repository for Rohit Pappu's lab at Washington University in St. Louis

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  1. localCIDER localCIDER Public

    localCIDER - sequence analysis tool for disordered protein sequences

    Python 23 14

  2. LASSI LASSI Public

    LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions

    C 16 8

  3. xdrf xdrf Public

    This directory contains source of the portable data compression library xdrf, which was developed for EUROPORT.

    M4 7 4

  4. Data-and-Analysis-for-PLCD-Mixtures Data-and-Analysis-for-PLCD-Mixtures Public

    Data and Analysis code used in the following paper: "Phase Separation of Protein Mixtures is Driven by the Interplay of Homotypic and Heterotypic Interactions"

    Cython 3

  5. King-etal-Nucleoli King-etal-Nucleoli Public

    This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Available at SSRN: https://ssrn.com/abstra…

    Jupyter Notebook 3

  6. damfret_classifier damfret_classifier Public

    This is a Python package for classifying DAmFRET data based on supervised learning. The data can also be analyzed to allow mechanistic inferences regarding nucleation of ordered assemblies.

    Python 2

Repositories

Showing 10 of 21 repositories
  • Motility Public
    Pappulab/Motility’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated May 5, 2025
  • material_properties Public

    Data repository and analysis routines used to study material properties of prion-like low-complexity domains as described in https://doi.org/10.1038/s41567-024-02558-1

    Pappulab/material_properties’s past year of commit activity
    MATLAB 1 0 0 0 Updated May 4, 2025
  • metastable-condensates Public
    Pappulab/metastable-condensates’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 24, 2025
  • Data-and-analysis-for-RNA-Interfaces Public
    Pappulab/Data-and-analysis-for-RNA-Interfaces’s past year of commit activity
    MATLAB 1 0 0 0 Updated Mar 20, 2025
  • LASSI Public

    LASSI - Lattice Simulation Engine For Stickers And Spacer Interactions

    Pappulab/LASSI’s past year of commit activity
    C 16 GPL-3.0 8 2 0 Updated Jan 4, 2025
  • n130-liquid-structure Public

    Data and analyses scripts used for `doi:10.1038/s41467-024-47602-z`

    Pappulab/n130-liquid-structure’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Apr 29, 2024
  • Glutamate_vs_Chloride_Clustering Public
    Pappulab/Glutamate_vs_Chloride_Clustering’s past year of commit activity
    Jupyter Notebook 1 0 0 0 Updated Apr 19, 2024
  • King-etal-Nucleoli Public

    This GitHub repository contains the code and data for the manuscript "Macromolecular Condensation Organizes Nucleolar Sub-Phases to Set Up a pH Gradient." Available at SSRN: https://ssrn.com/abstract=4520791 or http://dx.doi.org/10.2139/ssrn.4520791

    Pappulab/King-etal-Nucleoli’s past year of commit activity
    Jupyter Notebook 3 0 0 0 Updated Feb 15, 2024
  • xdrf Public

    This directory contains source of the portable data compression library xdrf, which was developed for EUROPORT.

    Pappulab/xdrf’s past year of commit activity
    M4 7 MIT 4 2 0 Updated Jan 6, 2024
  • FIREBALL Public

    A suite of computational tools for constructing, analyzing, and fitting phase diagrams and coil-to-globule transitions.

    Pappulab/FIREBALL’s past year of commit activity
    Python 2 LGPL-3.0 2 0 0 Updated Nov 1, 2023
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