Set minimum dwi_denoise_window to 3

[tsalo]

Closes #1063.

Changes proposed in this pull request

• Ensure dwi_denoise_window is at least 3, as a value of 1 raises an error in dwidenoise.

[Copilot]

Pull request overview

This PR updates the DWI merge/denoising workflow to prevent dwidenoise from being invoked with an invalid/unsafe denoising window (specifically avoiding an extent of 1,1,1), addressing the crash described in issue #1063 for low-volume DWI series.

Changes:

• Clamp the automatically computed dwi_denoise_window to be at least 3 when using dwidenoise.

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[codecov-commenter]

Codecov Report

❌ Patch coverage is 50.00000% with 3 lines in your changes missing coverage. Please review.
✅ Project coverage is 47.33%. Comparing base (0fb1eac) to head (6f74cb4).
⚠️ Report is 1 commits behind head on main.

Files with missing lines	Patch %	Lines
qsiprep/cli/parser.py	25.00%	3 Missing ⚠️

Additional details and impacted files

@@           Coverage Diff           @@
##             main    #1064   +/-   ##
=======================================
  Coverage   47.33%   47.33%           
=======================================
  Files          66       66           
  Lines        9890     9891    +1     
  Branches     1098     1098           
=======================================
+ Hits         4681     4682    +1     
  Misses       4978     4978           
  Partials      231      231           

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[Copilot]

Pull request overview

Copilot reviewed 2 out of 2 changed files in this pull request and generated 1 comment.