Jupyterbook 1 --> MyST transition

.github/workflows/nightly-build.yaml

@@ -10,8 +10,13 @@ jobs:
     if: ${{ github.repository_owner == 'ProjectPythia' }}
     uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main
     with:
-      environment_name: ERA5_interactive
+      build_command: 'myst build --execute --html'
 
-  link-check:
-    if: ${{ github.repository_owner == 'ProjectPythia' }}
-    uses: ProjectPythia/cookbook-actions/.github/workflows/link-checker.yaml@main
+  deploy:
+    needs: build
+    uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main
+
+#   We don't have a link-checker with MyST right now
+#   link-check:
+#     if: ${{ github.repository_owner == 'ProjectPythia' }}
+#     uses: ProjectPythia/cookbook-actions/.github/workflows/link-checker.yaml@main

.github/workflows/publish-book.yaml

@@ -11,8 +11,9 @@ jobs:
   build:
     uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main
     with:
-      environment_name: ERA5_interactive
+      build_command: 'myst build --execute --html'
+
 
   deploy:
     needs: build
-    uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main
+    uses: ProjectPythia/cookbook-actions/.github/workflows/deploy-book.yaml@main

.github/workflows/replace-links.yaml

@@ -0,0 +1,31 @@
+name: replace-links
+
+on:
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    permissions:
+      contents: write
+
+    steps:
+      - uses: actions/checkout@v4
+      - name: Find and Replace Repository Name
+        uses: jacobtomlinson/gha-find-replace@v3
+        with:
+          find: "ProjectPythia/cookbook-template"
+          replace: "${{ github.repository_owner }}/${{ github.event.repository.name }}"
+          regex: false
+          exclude: ".github/workflows/replace-links.yaml"
+
+      - name: Find and Replace Repository ID
+        uses: jacobtomlinson/gha-find-replace@v3
+        with:
+          find: "475509405"
+          replace: "${{ github.repository_id}}"
+          regex: false
+          exclude: ".github/workflows/replace-links.yaml"
+
+      - name: Push changes
+        uses: stefanzweifel/git-auto-commit-action@v5

.github/workflows/trigger-book-build.yaml

@@ -6,6 +6,6 @@ jobs:
   build:
     uses: ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml@main
     with:
-      environment_name: ERA5_interactive
       artifact_name: book-zip-${{ github.event.number }}
+      base_url: '/${{ github.event.repository.name }}/_preview/${{ github.event.number }}'
       # Other input options are possible, see ProjectPythia/cookbook-actions/.github/workflows/build-book.yaml

.github/workflows/trigger-delete-preview.yaml

@@ -6,4 +6,4 @@ on:
 
 jobs:
   delete:
-    uses: ProjectPythia/cookbook-actions/.github/workflows/delete-preview.yaml@main
+    uses: ProjectPythia/cookbook-actions/.github/workflows/delete-preview.yaml@main

environment.yml

@@ -2,9 +2,8 @@ name: ERA5_interactive
 channels:
   - conda-forge
 dependencies:
-  - python<3.12
-  - jupyter-book
   - jupyterlab
+  - jupyterlab-myst
   - jupyter_server
   - zarr
   - dask
@@ -21,7 +20,7 @@ dependencies:
   - geopandas
   - gcsfs
   - cf_xarray
-  - sphinx-pythia-theme
   - hvplot
   - spatialpandas
-  - watchfiles
+  - watchfiles
+  - mystmd

myst.yml

@@ -0,0 +1,33 @@
+# See docs at: https://mystmd.org/guide/frontmatter
+version: 1
+extends:
+  - https://raw.githubusercontent.com/projectpythia/pythia-config/main/pythia.yml
+project:
+  id: c598479d-c383-4e18-a8a5-b1840fefbec8
+  # title:
+  # description:
+  # keywords: []
+  # authors: []
+  github: https://github.com/projectpythia/ERA5_interactive-cookbook
+  # To autogenerate a Table of Contents, run "myst init --write-toc"
+  toc:
+    # Auto-generated by `myst init --write-toc`
+    - file: README.md
+    - title: Preamble
+      children:
+        - file: notebooks/how-to-cite.md
+    - title: Visualization Notebooks
+      children:
+        - file: notebooks/01BasicVisualization.ipynb
+        - file: notebooks/02InteractiveVisualization.ipynb
+        - file: notebooks/03_hvplot.ipynb
+        - file: notebooks/04_dashboard.ipynb
+    - title: Preprocessing Notebooks for NCAR RDA
+      children:
+        - file: notebooks/05_data_preprocessing.ipynb
+        - file: notebooks/06_era5_anomaly.ipynb
+
+site:
+  options:
+    logo: notebooks/images/logos/pythia_logo-white-rtext.svg
+    folders: true