iBEAt analysis

Repository structure:

mapping: basic functions operating on numpy arrays, performing modelling and parameter mapping.
pipelines: dbdicom to dbdicom functions performing steps of the analysis.
scripts: batch scripts for running on the cluster or interacting with cloud data.
gui: integration of pipelines into wezel menus.
utilities: some basic functionality that does not fit in other folders.

Name		Name	Last commit message	Last commit date
Latest commit History 435 Commits
.vscode		.vscode
gui		gui
models		models
nnunetv2		nnunetv2
pipelines		pipelines
scripts		scripts
utilities		utilities
.gitignore		.gitignore
LICENSE		LICENSE
README.md		README.md
hook-dipy.py		hook-dipy.py
hook-itk.py		hook-itk.py
hook-monai.py		hook-monai.py
hook-pydicom.py		hook-pydicom.py
hook-sklearn.py		hook-sklearn.py
hook-wezel.py		hook-wezel.py
ibeat-logo.PNG		ibeat-logo.PNG
main_GUI.py		main_GUI.py
main_cluster_batch.py		main_cluster_batch.py
main_cluster_batch_AI_data_preparation.py		main_cluster_batch_AI_data_preparation.py
main_external_local_single_subject.py		main_external_local_single_subject.py
main_local_batch.py		main_local_batch.py
main_local_single_subject.py		main_local_single_subject.py
myscript.sh		myscript.sh
requirements.txt		requirements.txt
requirements_internal.txt		requirements_internal.txt
zenodo_UNETR.txt		zenodo_UNETR.txt
zenodo_nnunet.txt		zenodo_nnunet.txt

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