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v2.0.5rc1 Pending Release Checklist (since v2.0.0)

Status: Open.

#597 In Starlitnightly/omicverse;

· Starlitnightly opened on Mar 24, 2026

OmicVerse Agent misreports OpenAI runtime dependency errors as openai package not installed

Status: Open.

#595 In Starlitnightly/omicverse;

· BioinfoXP opened on Mar 21, 2026

ov.pp.qc fails to detect rat mitochondrial genes with mt_startswith="Mt-"

Status: Open.

#592 In Starlitnightly/omicverse;

· Doctorluka opened on Mar 16, 2026

Subagents and full self analysis loop

Status: Open.

#536 In Starlitnightly/omicverse;

· HendricksJudy opened on Feb 17, 2026

This error is caused by a version incompatibility between transformers and huggingface_hub.

Status: Open.

#528 In Starlitnightly/omicverse;

· yaotingsun opened on Jan 28, 2026

Error when passing a cell type-marker gene dictionary to ov.pl.dotplot

Status: Open.

#514 In Starlitnightly/omicverse;

· zhangdae opened on Dec 10, 2025

Geneformer算法后续功能补充

Status: Open.

#509 In Starlitnightly/omicverse;

· wujiajin0920 opened on Dec 1, 2025

基础质控后一个不应该被质控的基因丢失

Status: Open.

#504 In Starlitnightly/omicverse;

· guohout opened on Nov 23, 2025

dgl dependency issue when calling CAST method from ov.space.clusters()

Status: Open.

#503 In Starlitnightly/omicverse;

· titianyy opened on Nov 22, 2025

KeyError: 'gene_symbol' in ppi_deg.plot_network

Status: Open.

#500 In Starlitnightly/omicverse;

· sharkLoc opened on Nov 20, 2025

The install of pixi from conda have error, the conda version is 1.7.7, I have try

Status: Open.

#489 In Starlitnightly/omicverse;

· yudalang3 opened on Nov 6, 2025

Feature Request: Integrate inferCNV algorithm

Status: Open.

#451 In Starlitnightly/omicverse;

· Aegon8719 opened on Oct 3, 2025