NF1_organoid_profile_analysis

This repo contains analysis code of profiles generated in multiple image-based profiling repos.

• 3D image-based profiles of NF1 organoids were generated from: NF1 3D Organoid profiling pipeline
• 2D image-based profiles of NF1 organoids were generated from: NF1 Organoid profiling pipeline
• Cell types will be predicted using: Cell type prediction in NF1 organoids

Repo modules

• 0.download_data: Download image-based profiles from the internet (not yet available)
• 1.EDA: Exploratory data analysis of image-based profiles