AI for genomic medicine
Bulk RNAseq pre-processing pipeline
Jupyter Notebook 1
A proof of concept for simpler UIs in expert mode
Julia
Repo that contains the different steps to test and creating github actions for python code. The aim is to be a reference to the python developers of WhiteLabGenomics.
Shell
Forked from broadinstitute/genepy
Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
Python
Forked from getzlab/dalmatian
dalmatian is a collection of high-level companion functions for Firecloud and FISS.
Python 1
CellBender is a software package for eliminating technical artifacts from high-throughput single-cell RNA sequencing (scRNA-seq) data.
The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.
Genepy is an open source utils package covering a range of useful functions for large scale genomics data analysis in python
🧬 gget enables efficient querying of genomic reference databases. part of the metaAtlas
Code and documentation for the curation of cellxgene datasets
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