Skip to content
@YosefLab

Yosef Lab

Department of Systems Immunology, Weizmann Institute of Science

Pinned Loading

  1. VISION VISION Public

    Signature Analysis and Visualization for Single-Cell RNA-seq

    R 185 33

  2. Cassiopeia Cassiopeia Public

    A Package for Cas9-Enabled Single Cell Lineage Tracing Tree Reconstruction

    Python 100 32

  3. Compass Compass Public

    In-Silico Modeling of Metabolic Heterogeneity using Single-Cell Transcriptomes

    Python 127 33

  4. Hotspot Hotspot Public

    Python 163 19

  5. epitome epitome Public

    Pipeline for predicting ChIP-seq peaks in novel cell types using chromatin accessibility

    Python 10 5

  6. popV popV Public

    Python 101 20

Repositories

Showing 10 of 74 repositories
  • scvi-tools-mcp Public

    MCP (Model Context Protocol) server for deep probabilistic analysis of single-cell omics data using scvi-tools

    YosefLab/scvi-tools-mcp's past year of commit activity
    Python 2 BSD-3-Clause 0 0 1 Updated Sep 14, 2026
  • scviva-tools Public

    scVIVA-Tools: A unified toolkit for spatial transcriptomics analysis

    YosefLab/scviva-tools's past year of commit activity
    Python 10 BSD-3-Clause 2 0 5 Updated Sep 14, 2026
  • treedata Public

    anndata with trees

    YosefLab/treedata's past year of commit activity
    Python 9 BSD-3-Clause 4 0 2 Updated Sep 14, 2026
  • destvi_utils Public

    Utilities for downstream analysis of destVI

    YosefLab/destvi_utils's past year of commit activity
    Python 0 BSD-3-Clause 0 1 1 Updated Sep 14, 2026
  • scib-metrics Public

    Accelerated, Python-only, single-cell integration benchmarking metrics

    YosefLab/scib-metrics's past year of commit activity
    Python 97 BSD-3-Clause 22 2 5 Updated Sep 14, 2026
  • popV Public
    YosefLab/popV's past year of commit activity
    Python 101 MIT 20 7 2 Updated Sep 14, 2026
  • scviva-tools-website Public

    website for scVIVA-Tools

    YosefLab/scviva-tools-website's past year of commit activity
    JavaScript 0 BSD-3-Clause 0 0 4 Updated Sep 14, 2026
  • pycea Public

    scverse lineage tracing analysis toolkit

    YosefLab/pycea's past year of commit activity
    Python 4 BSD-3-Clause 2 0 0 Updated Sep 2, 2026
  • csde Public
    YosefLab/csde's past year of commit activity
    Python 12 BSD-3-Clause 1 2 0 Updated Sep 1, 2026
  • mrvi_archive Public

    Multi-resolution Variational Inference

    YosefLab/mrvi_archive's past year of commit activity
    Python 24 BSD-3-Clause 8 2 1 Updated Aug 31, 2026