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Pseudobulk now does not need to resort fragment files. #203

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Pseudobulk now does not need to resort fragment files. #203

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c9d22bc
Pseudobulk now does not need to resort fragment files.
SeppeDeWinter Mar 7, 2025
a8fc34b
Refactor.
SeppeDeWinter Mar 7, 2025
de9c483
Make use of tabix file to seek to chromosome position.
SeppeDeWinter Mar 8, 2025
a33fad9
Only skip header when not using index.
SeppeDeWinter Mar 10, 2025
48e1102
Add testing code.
SeppeDeWinter Mar 10, 2025
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357 changes: 357 additions & 0 deletions pycistopic-lib/Cargo.lock
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20 changes: 20 additions & 0 deletions pycistopic-lib/Cargo.toml
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Original file line number Diff line number Diff line change
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[package]
name = "pycistopic-lib"
version = "0.1.0"
edition = "2021"

[lib]
# The name of the native library. This is the name which will be used in Python to import the
# library (i.e. `import string_sum`). If you change this, you must also change the name of the
# `#[pymodule]` in `src/lib.rs`.
name = "pycistopic_lib"
# "cdylib" is necessary to produce a shared library for Python to import from.
#
# Downstream Rust code (including code in `bin/`, `examples/`, and `tests/`) will not be able
# to `use string_sum;` unless the "rlib" or "lib" crate type is also included, e.g.:
# crate-type = ["cdylib", "rlib"]
crate-type = ["cdylib"]

[dependencies]
pyo3 = { version = "0.23.5", features = ["extension-module"] }
noodles = { version = "0.93.0", features = ["tabix", "bgzf", "csi", "core"] }
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