Skip to content

Integrate templateflow #97

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
Dhananjhay merged 9 commits into from
Jan 19, 2026
Merged

Integrate templateflow #97

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
9 commits
Select commit Hold shift + click to select a range
89899a2
integrate templateflow
Dhananjhay Jan 10, 2026
95abdde
add logic
Dhananjhay Jan 11, 2026
7b0cb7e
debug the logic to synchronize download_template rule with regqc feature
Dhananjhay Jan 13, 2026
1b2feda
add conditional logic to work with different templates
Dhananjhay Jan 13, 2026
355f56c
fix ruff linting error
Dhananjhay Jan 16, 2026
651564d
fix snakefmt linting
Dhananjhay Jan 16, 2026
3b5684e
delete unsupported templates and patch the logic to template path
Dhananjhay Jan 16, 2026
0273fd4
fix ruff lint check
Dhananjhay Jan 19, 2026
3d55482
remove snakemake_timestamps from osf storage and the conditional true…
Dhananjhay Jan 19, 2026
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
7 changes: 7 additions & 0 deletions autoafids/config/snakebids.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -147,6 +147,13 @@ parse_args:
default: false
required: false

--template-flow:
help: 'Downloads a template from templateflow and uses it to assess the quality of registration.'
choices: ['MNI152Lin', 'MNI152NLin2009cAsym', 'MNI152NLin6Sym', 'OASIS30ANTs', 'MNI152NLin2009cSym', 'MNI305', 'fsaverage', 'MNI152NLin2009bSym', 'MNI152NLin6Asym','MNIColin27']
default: false
required: false
type: str

--fidqc:
help: 'Generate *.html files for QC of AutoAFIDs outputs. (default: %(default)s)'
dest: "fidqc"
Expand Down
35 changes: 35 additions & 0 deletions autoafids/resources/regqc/tpl-MNI152Lin_res-01_desc-groundtruth_afids.fcsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
# Markups fiducial file version = 4.6
# CoordinateSystem = 0
# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
vtkMRMLMarkupsFiducialNode_1,0.265,2.8417499999999998,-4.8774999999999995,0,0,0,1,1,1,0,1,AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_2,0.2445,-27.409750000000003,-3.4354999999999998,0,0,0,1,1,1,0,2,PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_3,0.4515,-37.737750000000005,-11.50975,0,0,0,1,1,1,0,3,infracollicular sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_4,0.44575,-22.92625,-20.76375,0,0,0,1,1,1,0,4,PMJ,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_5,0.3135,-16.02675,-12.569500000000001,0,0,0,1,1,1,0,5,superior interpeduncular fossa,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_6,12.102500000000001,-27.875,-11.502500000000001,0,0,0,1,1,1,0,6,R superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_7,-10.94475,-28.10075,-11.72175,0,0,0,1,1,1,0,7,L superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_8,11.13075,-30.933750000000003,-20.5895,0,0,0,1,1,1,0,8,R inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_9,-10.21625,-31.3505,-21.23725,0,0,0,1,1,1,0,9,L inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_10,0.38425,-53.887499999999996,1.59275,0,0,0,1,1,1,0,10,culmen,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_11,0.452,-8.468,-14.756499999999999,0,0,0,1,1,1,0,11,intermammillary sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_12,2.9812499999999997,-8.50625,-14.4335,0,0,0,1,1,1,0,12,R MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_13,-1.8632499999999999,-8.5285,-14.462,0,0,0,1,1,1,0,13,L MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_14,0.446,-32.061,-0.18025,0,0,0,1,1,1,0,14,pineal gland,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_15,15.64825,3.7824999999999998,24.4835,0,0,0,1,1,1,0,15,R LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_16,-14.961,3.7824999999999998,24.49425,0,0,0,1,1,1,0,16,L LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_17,20.096,-27.11825,25.02375,0,0,0,1,1,1,0,17,R LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_18,-19.12425,-27.432,25.043499999999998,0,0,0,1,1,1,0,18,L LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_19,0.27575,33.002,3.20125,0,0,0,1,1,1,0,19,genu of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_20,0.389,-38.60775,5.9295,0,0,0,1,1,1,0,20,splenium of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_21,35.3565,-5.468999999999999,-24.86,0,0,0,1,1,1,0,21,R AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_22,-33.27625,-8.8255,-23.63625,0,0,0,1,1,1,0,22,L AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_23,21.103749999999998,-10.334999999999999,-17.2245,0,0,0,1,1,1,0,23,R superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_24,-18.887500000000003,-11.908750000000001,-16.926750000000002,0,0,0,1,1,1,0,24,L superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_25,21.724999999999998,-4.606,-28.0105,0,0,0,1,1,1,0,25,R inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_26,-19.297,-5.2415,-25.759500000000003,0,0,0,1,1,1,0,26,L inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_27,14.356499999999999,-38.446,3.676,0,0,0,1,1,1,0,27,R indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_28,-14.013,-40.19825,2.217,0,0,0,1,1,1,0,28,L indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_29,21.1005,-78.59375,3.8802499999999993,0,0,0,1,1,1,0,29,R ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_30,-18.045499999999997,-82.6635,2.4375,0,0,0,1,1,1,0,30,L ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_31,12.953,17.591749999999998,-12.82825,0,0,0,1,1,1,0,31,R olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_32,-12.935749999999999,17.182249999999996,-13.61225,0,0,0,1,1,1,0,32,L olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
35 changes: 35 additions & 0 deletions autoafids/resources/regqc/tpl-MNI152NLin2009bSym_res-1_desc-groundtruth_afids.fcsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
# Markups fiducial file version = 4.6
# CoordinateSystem = 0
# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
vtkMRMLMarkupsFiducialNode_1,-0.1198055,2.55212,-4.81723,0,0,0,1,1,1,0,1,AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_2,0.1409195,-25.124,-2.096035,0,0,0,1,1,1,0,2,PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_3,0.130151,-37.8742,-10.05817,0,0,0,1,1,1,0,3,infracollicular sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_4,0.0267405,-23.35095,-21.87635,0,0,0,1,1,1,0,4,PMJ,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_5,-0.01609995,-14.39165,-10.7025,0,0,0,1,1,1,0,5,superior interpeduncular fossa,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_6,13.3752,-26.0718,-9.788495,0,0,0,1,1,1,0,6,R superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_7,-13.05015,-26.38415,-9.760085,0,0,0,1,1,1,0,7,L superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_8,11.1066,-30.21855,-21.3211,0,0,0,1,1,1,0,8,R inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_9,-10.8376,-30.35535,-21.02715,0,0,0,1,1,1,0,9,L inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_10,-0.0609305,-52.3597,2.02387,0,0,0,1,1,1,0,10,culmen,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_11,-0.175911,-8.20253,-15.39965,0,0,0,1,1,1,0,11,intermammillary sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_12,2.10252,-8.12621,-14.502,0,0,0,1,1,1,0,12,R MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_13,-1.850385,-7.991405,-14.413,0,0,0,1,1,1,0,13,L MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_14,-0.183038,-31.2358,0.586406,0,0,0,1,1,1,0,14,pineal gland,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_15,15.1932,6.031435,25.2426,0,0,0,1,1,1,0,15,R LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_16,-15.43225,6.228585,24.9267,0,0,0,1,1,1,0,16,L LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_17,18.54945,-22.73095,28.598,0,0,0,1,1,1,0,17,R LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_18,-18.6767,-22.7815,28.42485,0,0,0,1,1,1,0,18,L LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_19,0.002431,33.43875,2.52457,0,0,0,1,1,1,0,19,genu of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_20,0.132994,-37.6245,6.401015,0,0,0,1,1,1,0,20,splenium of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_21,34.47875,-4.880005,-26.81425,0,0,0,1,1,1,0,21,R AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_22,-34.3701,-4.84792,-26.9405,0,0,0,1,1,1,0,22,L AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_23,17.93685,-10.93965,-17.9412,0,0,0,1,1,1,0,23,R superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_24,-18.21465,-10.78475,-18.1403,0,0,0,1,1,1,0,24,L superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_25,20.91065,-4.410115,-27.6511,0,0,0,1,1,1,0,25,R inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_26,-20.9084,-4.5878,-27.29665,0,0,0,1,1,1,0,26,L inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_27,13.69415,-43.103,5.85519,0,0,0,1,1,1,0,27,R indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_28,-13.33945,-43.3071,5.90314,0,0,0,1,1,1,0,28,L indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_29,19.8371,-81.1685,3.90738,0,0,0,1,1,1,0,29,R ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_30,-19.93535,-81.2627,4.248705,0,0,0,1,1,1,0,30,L ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_31,12.54255,17.7086,-12.74795,0,0,0,1,1,1,0,31,R olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_32,-12.8065,18.11375,-12.85975,0,0,0,1,1,1,0,32,L olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
35 changes: 35 additions & 0 deletions autoafids/resources/regqc/tpl-MNI152NLin2009cAsym_res-01_desc-groundtruth_afids.fcsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
# Markups fiducial file version = 4.6
# CoordinateSystem = 0
# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
vtkMRMLMarkupsFiducialNode_1,-0.204861407692308,2.72288076923077,-4.88105282051282,0,0,0,1,1,1,0,1,AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_2,-0.00726026948717949,-25.0450538461538,-2.21068230769231,0,0,0,1,1,1,0,2,PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_3,0.025998141025641,-37.691917948718,-11.0111497435897,0,0,0,1,1,1,0,3,infracollicular sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_4,-0.0892198512820513,-23.1885743589744,-21.5288358974359,0,0,0,1,1,1,0,4,PMJ,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_5,-0.05649251,-13.7676564102564,-10.950028974359,0,0,0,1,1,1,0,5,superior interpeduncular fossa,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_6,13.3113025641026,-25.951058974359,-9.74885435897436,0,0,0,1,1,1,0,6,R superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_7,-13.607458974359,-26.4451,-9.7076082051282,0,0,0,1,1,1,0,7,L superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_8,10.8321820512821,-30.8104076923077,-21.5949358974359,0,0,0,1,1,1,0,8,R inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_9,-10.9824102564103,-30.8778025641026,-21.4372025641026,0,0,0,1,1,1,0,9,L inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_10,0.0100564897435897,-52.5094615384615,2.14842435897436,0,0,0,1,1,1,0,10,culmen,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_11,-0.0743417574102564,-8.36030051282051,-15.9354820512821,0,0,0,1,1,1,0,11,intermammillary sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_12,2.02761256410256,-8.15453153846154,-15.0245538461538,0,0,0,1,1,1,0,12,R MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_13,-2.19342487179487,-8.21593282051282,-15.0426743589744,0,0,0,1,1,1,0,13,L MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_14,0.00940744421052632,-31.5985789473684,0.568596455263158,0,0,0,1,1,1,0,14,pineal gland,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_15,15.1850526315789,5.61940868421053,24.9488552631579,0,0,0,1,1,1,0,15,R LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_16,-15.7984342105263,5.47038342105263,25.0905473684211,0,0,0,1,1,1,0,16,L LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_17,18.7231289473684,-22.0626210526316,28.0333394736842,0,0,0,1,1,1,0,17,R LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_18,-18.4848157894737,-22.2426736842105,28.1745157894737,0,0,0,1,1,1,0,18,L LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_19,-0.111086676315789,33.3615236842105,2.12355523157895,0,0,0,1,1,1,0,19,genu of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_20,0.116840065,-37.6019447368421,6.49650894736842,0,0,0,1,1,1,0,20,splenium of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_21,34.0034921052632,-4.056905,-27.3505,0,0,0,1,1,1,0,21,R AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_22,-34.8327763157895,-6.646575,-25.3468578947368,0,0,0,1,1,1,0,22,L AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_23,17.4263131578947,-10.0524047368421,-18.2650921052632,0,0,0,1,1,1,0,23,R superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_24,-18.1468184210526,-10.9803721052632,-18.3750131578947,0,0,0,1,1,1,0,24,L superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_25,20.4641447368421,-4.03479921052632,-28.0214973684211,0,0,0,1,1,1,0,25,R inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_26,-21.3443842105263,-5.12460973684211,-27.9912052631579,0,0,0,1,1,1,0,26,L inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_27,14.6365184210526,-40.7174131578947,4.71004973684211,0,0,0,1,1,1,0,27,R indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_28,-14.8907842105263,-43.0901605263158,4.23491921052632,0,0,0,1,1,1,0,28,L indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_29,20.5600675675676,-79.8774891891892,4.60286108108108,0,0,0,1,1,1,0,29,R ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_30,-18.9085052631579,-82.82955,3.54751710526316,0,0,0,1,1,1,0,30,L ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_31,11.8931421052632,18.5102315789474,-12.3773210526316,0,0,0,1,1,1,0,31,R olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_32,-13.3650815789474,17.0294973684211,-13.0638105263158,0,0,0,1,1,1,0,32,L olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
35 changes: 35 additions & 0 deletions autoafids/resources/regqc/tpl-MNI152NLin2009cSym_res-1_desc-groundtruth_afids.fcsv
View file
Open in desktop
Original file line number Diff line number Diff line change
@@ -0,0 +1,35 @@
# Markups fiducial file version = 4.6
# CoordinateSystem = 0
# columns = id,x,y,z,ow,ox,oy,oz,vis,sel,lock,label,desc,associatedNodeID
vtkMRMLMarkupsFiducialNode_1,-0.06725,2.8625,-4.833,0,0,0,1,1,1,0,1,AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_2,-0.08449999999999999,-25.1645,-1.935,0,0,0,1,1,1,0,2,PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_3,-0.036750000000000005,-37.904999999999994,-12.25175,0,0,0,1,1,1,0,3,infracollicular sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_4,0.092,-23.63375,-21.429,0,0,0,1,1,1,0,4,PMJ,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_5,-0.01375,-13.621,-11.32725,0,0,0,1,1,1,0,5,superior interpeduncular fossa,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_6,13.12325,-26.3525,-9.777000000000001,0,0,0,1,1,1,0,6,R superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_7,-13.6855,-26.3955,-9.554,0,0,0,1,1,1,0,7,L superior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_8,11.1195,-30.851,-21.99175,0,0,0,1,1,1,0,8,R inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_9,-11.11475,-30.957749999999997,-22.075,0,0,0,1,1,1,0,9,L inferior LMS,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_10,-0.2355,-52.72925,1.9145,0,0,0,1,1,1,0,10,culmen,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_11,-0.013999999999999995,-8.295,-16.229,0,0,0,1,1,1,0,11,intermammillary sulcus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_12,2.232,-8.0815,-14.92775,0,0,0,1,1,1,0,12,R MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_13,-2.2039999999999997,-8.10775,-14.858,0,0,0,1,1,1,0,13,L MB,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_14,-0.05125,-31.646250000000002,0.44525000000000003,0,0,0,1,1,1,0,14,pineal gland,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_15,15.315000000000001,5.22375,24.67375,0,0,0,1,1,1,0,15,R LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_16,-15.31825,5.2265,24.732,0,0,0,1,1,1,0,16,L LV at AC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_17,18.7605,-22.9955,27.704250000000002,0,0,0,1,1,1,0,17,R LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_18,-18.75525,-22.926,27.444999999999997,0,0,0,1,1,1,0,18,L LV at PC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_19,0.12949999999999998,33.259,1.9165,0,0,0,1,1,1,0,19,genu of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_20,-0.18475,-37.6545,6.0825,0,0,0,1,1,1,0,20,splenium of CC,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_21,34.238249999999994,-5.7415,-26.74375,0,0,0,1,1,1,0,21,R AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_22,-34.24725,-6.14975,-26.351999999999997,0,0,0,1,1,1,0,22,L AL temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_23,18.3745,-10.984,-17.58725,0,0,0,1,1,1,0,23,R superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_24,-18.55675,-11.1765,-17.7785,0,0,0,1,1,1,0,24,L superior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_25,21.77375,-4.7692499999999995,-29.44175,0,0,0,1,1,1,0,25,R inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_26,-22.153000000000002,-4.979500000000001,-29.33125,0,0,0,1,1,1,0,26,L inferior AM temporal horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_27,14.4425,-42.2705,4.43325,0,0,0,1,1,1,0,27,R indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_28,-14.478,-42.569750000000006,4.25425,0,0,0,1,1,1,0,28,L indusium griseum origin,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_29,20.255000000000003,-80.53275000000001,4.89525,0,0,0,1,1,1,0,29,R ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_30,-19.86775,-81.0495,4.46075,0,0,0,1,1,1,0,30,L ventral occipital horn,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_31,12.474250000000001,16.982499999999998,-13.2695,0,0,0,1,1,1,0,31,R olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
vtkMRMLMarkupsFiducialNode_32,-12.88525,17.2745,-13.21375,0,0,0,1,1,1,0,32,L olfactory sulcal fundus,vtkMRMLScalarVolumeNode1
Loading
Loading