Bump sphinx-autoapi from 3.4.0 to 3.5.0 #501

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Python Tests

	on:
	push:
	branches: ["*"]
	pull_request:
	branches: ["*"]

	jobs:
	tests:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	python-version: ["3.10", "3.11", "3.12", "3.13"]

	steps:
	- uses: actions/checkout@v4
	- name: Install the latest version of uv and set the python version
	uses: astral-sh/setup-uv@v4
	with:
	python-version: ${{ matrix.python-version }}
	enable-cache: true
	cache-dependency-glob: \|
	*/requirements.txt
	**/pyproject.toml
	- name: Create venv
	run: \|
	uv venv
	- name: Install dependencies
	run: \|
	if [ -f requirements.txt ]; then uv pip install -r requirements.txt; fi
	if [ -f requirements-dev.txt ]; then uv pip install -r requirements-dev.txt; fi
	- name: Lint with mypy
	run: \|
	uv run mypy --no-strict-optional --ignore-missing-imports --explicit-package-bases geneticengine
	- name: Check install
	run: \|
	uv pip install -e .
	- name: Test with pytest
	run: uv run --frozen pytest --cov --benchmark-skip
	- name: Upload coverage reports to Codecov
	if: ${{ (matrix.python-version == '3.13') }}
	uses: codecov/codecov-action@v3
	env:
	CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }}

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