add alg install script

Author: lacava

install_algorithms.sh

@@ -0,0 +1,76 @@
+# note: make sure conda srbench environment is installed 
+set -e
+
+if (($#==1)); #check if number of arguments is 1 
+then
+    subnames=($1)
+else
+    subnames=$(ls algorithms/)
+fi
+
+failed=()
+succeeded=()
+
+# install methods
+echo "////////////////////////////////////////"
+echo "installing SR methods..."
+echo ${subnames}
+echo "////////////////////////////////////////"
+
+# install all methods
+for SUBNAME in ${subnames[@]} ; do
+
+    echo "vvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvvv"
+    echo ".................... Installing $SUBNAME ..."
+
+    SUBFOLDER=algorithms/$SUBNAME
+    SUBENV=srbench-$SUBNAME
+    # install method
+    # cd $SUBFOLDER
+    pwd
+    echo "Installing dependencies for ${SUBNAME}"
+    echo "........................................"
+    echo "Copying base environment"
+    echo "........................................"
+    conda create --name $SUBENV --clone srbench
+    if test -f "environment.yml" ; then
+        echo "Update alg env from environment.yml"
+        echo "........................................"
+        mamba env update -n $SUBENV -f ${SUBFOLDER}/environment.yml
+    fi
+
+    if test -f "requirements.txt" ; then
+        echo "Update alg env from requirements.txt"
+        echo "........................................"
+        mamba run -n srbench-${SUBENV} pip install -r ${SUBFOLDER}/requirements.txt
+    fi
+
+    eval "$(conda shell.bash hook)"
+    conda init bash
+    conda activate $SUBENV
+    if test -f "install.sh" ; then
+        echo "running install.sh..."
+        echo "........................................"
+        cd $SUBFOLDER
+        bash install.sh
+        cd ../../
+    else
+        echo "::warning::No install.sh file found in ${SUBFOLDER}."
+        echo " Assuming the method is a conda package specified in environment.yml."
+    fi
+
+    # Copy files and environment
+    # echo "Copying files and environment to experiment/methods ..."
+    # echo "........................................"
+    # cd ../../
+    mkdir -p experiment/methods/$SUBNAME
+    cp $SUBFOLDER/regressor.py experiment/methods/$SUBNAME/
+    cp $SUBFOLDER/metadata.yml experiment/methods/$SUBNAME/
+    touch experiment/methods/$SUBNAME/__init__.py
+
+    # export env
+    echo "Exporting environment"
+    # conda env export -n $SUBENV > $SUBFOLDER/environment.lock.yml
+    conda env export -n $SUBENV > $SUBFOLDER/environment.lock.yml
+    echo "^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^"
+done