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@andersen-lab

Andersen Laboratory @ Scripps Research

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  1. HCoV-19-Genomics HCoV-19-Genomics Public

    SARS-CoV-2 genomics

    16 5

  2. ivar ivar Public

    Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    C++ 129 43

  3. Freyja Freyja Public

    Depth-weighted De-Mixing

    HTML 125 38

  4. avian-influenza avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    Python 36 9

  5. MPXV_wastewater_sequencing MPXV_wastewater_sequencing Public

    Python 3 1

Repositories

Showing 10 of 63 repositories
  • Freyja-data Public

    Previous versions of Freyja barcodes and metadata files

    andersen-lab/Freyja-data’s past year of commit activity
    Python 6 0 0 0 Updated Nov 11, 2025
  • Freyja Public

    Depth-weighted De-Mixing

    andersen-lab/Freyja’s past year of commit activity
    HTML 125 BSD-2-Clause 38 4 0 Updated Nov 11, 2025
  • ivar Public Forked from gkarthik/ivar

    iVar is a computational package that contains functions broadly useful for viral amplicon-based sequencing.

    andersen-lab/ivar’s past year of commit activity
    C++ 129 GPL-3.0 45 39 9 Updated Nov 10, 2025
  • Freyja-nf Public Forked from andersen-lab/Freyja-SC2

    nextflow pipeline for NICD wastewater surveillance

    andersen-lab/Freyja-nf’s past year of commit activity
    Nextflow 1 GPL-3.0 5 0 0 Updated Nov 10, 2025
  • Freyja-SC2 Public
    andersen-lab/Freyja-SC2’s past year of commit activity
    Python 7 GPL-3.0 5 0 0 Updated Nov 8, 2025
  • avian-influenza Public

    Consensus sequences for U.S. H5N1 clade 2.3.4.4b

    andersen-lab/avian-influenza’s past year of commit activity
    Python 36 9 1 0 Updated Nov 7, 2025
  • Bygul Public

    Amplicon read simulator

    andersen-lab/Bygul’s past year of commit activity
    Python 1 BSD-2-Clause 0 0 1 Updated Nov 4, 2025
  • SARS-CoV-2_WasteWater_San-Diego Public
    andersen-lab/SARS-CoV-2_WasteWater_San-Diego’s past year of commit activity
    Python 13 4 1 0 Updated Oct 21, 2025
  • sd_ww_processing Public

    repo for data storage and shared analyses

    andersen-lab/sd_ww_processing’s past year of commit activity
    Python 0 0 0 0 Updated Oct 21, 2025
  • covar Public
    andersen-lab/covar’s past year of commit activity
    Rust 0 0 1 0 Updated Oct 6, 2025
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