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status checks #43

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Jul 6, 2023
Merged

status checks #43

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11 changes: 7 additions & 4 deletions scripts/Cloud9-Bootstrap.sh
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Original file line number Diff line number Diff line change
Expand Up @@ -73,9 +73,12 @@ fi
sudo chmod 400 /home/ec2-user/.ssh/id_rsa

#Create the cluster and wait
/home/ec2-user/.local/bin/pcluster create-cluster --cluster-name "hpc-1click-${CLUSTER_NAME}" --cluster-configuration config.${AWS_REGION_NAME}.yaml --rollback-on-failure false --wait
CLUSTER_FULLNAME="hpc-1click-${CLUSTER_NAME}"
/home/ec2-user/.local/bin/pcluster create-cluster --cluster-name "${CLUSTER_FULLNAME}" --cluster-configuration config.${AWS_REGION_NAME}.yaml --rollback-on-failure false
cstatus='"CREATE_IN_PROGRESS"'; until [ ${cstatus} != '"CREATE_IN_PROGRESS"' ]; do sleep 10; cstatus=$(/home/ec2-user/.local/bin/pcluster describe-cluster -n "${CLUSTER_FULLNAME}" --query clusterStatus); done;

HEADNODE_PRIVATE_IP=$(/home/ec2-user/.local/bin/pcluster describe-cluster --cluster-name "hpc-1click-${CLUSTER_NAME}" | jq -r '.headNode.privateIpAddress')

HEADNODE_PRIVATE_IP=$(/home/ec2-user/.local/bin/pcluster describe-cluster --cluster-name "${CLUSTER_FULLNAME}" | jq -r '.headNode.privateIpAddress')
echo "export HEADNODE_PRIVATE_IP='${HEADNODE_PRIVATE_IP}'" >> cluster_env

# Modify the Message Of The Day
Expand All @@ -87,14 +90,14 @@ echo 'run-parts /etc/update-motd.d' >> /home/ec2-user/.bash_profile
#attach the ParallelCluster SG to the Cloud9 instance (for FSx or NFS)
INSTANCE_ID=$(curl http://169.254.169.254/latest/meta-data/instance-id)
SG_CLOUD9=$(aws ec2 describe-instances --instance-ids $INSTANCE_ID --query Reservations[*].Instances[*].SecurityGroups[*].GroupId --output text)
SG_HEADNODE=$(aws cloudformation describe-stack-resources --stack-name "hpc-1click-${CLUSTER_NAME}" --logical-resource-id ComputeSecurityGroup --query "StackResources[*].PhysicalResourceId" --output text)
SG_HEADNODE=$(aws cloudformation describe-stack-resources --stack-name "${CLUSTER_FULLNAME}" --logical-resource-id ComputeSecurityGroup --query "StackResources[*].PhysicalResourceId" --output text)
aws ec2 modify-instance-attribute --instance-id $INSTANCE_ID --groups $SG_CLOUD9 $SG_HEADNODE

#increase the maximum number of files that can be handled by file watcher,
sudo bash -c 'echo "fs.inotify.max_user_watches=524288" >> /etc/sysctl.conf' && sudo sysctl -p

if [[ $FSX_ID == "AUTO" ]];then
FSX_ID=$(aws cloudformation describe-stack-resources --stack-name "hpc-1click-${CLUSTER_NAME}" --logical-resource-id FSX0 --query "StackResources[*].PhysicalResourceId" --output text)
FSX_ID=$(aws cloudformation describe-stack-resources --stack-name "${CLUSTER_FULLNAME}" --logical-resource-id FSX0 --query "StackResources[*].PhysicalResourceId" --output text)
fi

FSX_DNS_NAME=$(aws fsx describe-file-systems --file-system-ids $FSX_ID --query "FileSystems[*].DNSName" --output text)
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